BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0664100 Os01g0664100|AK065234
(558 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0664100 Conserved hypothetical protein 1046 0.0
Os01g0601000 Conserved hypothetical protein 588 e-168
>Os01g0664100 Conserved hypothetical protein
Length = 558
Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/558 (92%), Positives = 518/558 (92%)
Query: 1 MADVEGQQPHQVSGVSRAQDGVAKVSLGKEHVPGSELWTDGLICAFELIKGHKKLVQHKS 60
MADVEGQQPHQVSGVSRAQDGVAKVSLGKEHVPGSELWTDGLICAFELIKGHKKLVQHKS
Sbjct: 1 MADVEGQQPHQVSGVSRAQDGVAKVSLGKEHVPGSELWTDGLICAFELIKGHKKLVQHKS 60
Query: 61 WPTIDSMQEKEVPMHMKRHISRNGHHVATMKPEECDVVENPRQTEFANDPSLFKDRPVHV 120
WPTIDSMQEKEVPMHMKRHISRNGHHVATMKPEECDVVENPRQTEFANDPSLFKDRPVHV
Sbjct: 61 WPTIDSMQEKEVPMHMKRHISRNGHHVATMKPEECDVVENPRQTEFANDPSLFKDRPVHV 120
Query: 121 RAILDHKWVPIGWSRIAELVQRVQSDASWDSEPAEMTDSEDDYTVADVAAPYWQRPVGPT 180
RAILDHKWVPIGWSRIAELVQRVQSDASWDSEPAEMTDSEDDYTVADVAAPYWQRPVGPT
Sbjct: 121 RAILDHKWVPIGWSRIAELVQRVQSDASWDSEPAEMTDSEDDYTVADVAAPYWQRPVGPT 180
Query: 181 WWCHVTAGHPSVDAWLNSAHWMHPAIRTALRDESRLISDRMKYLLYEVPVRVAGGLLFEL 240
WWCHVTAGHPSVDAWLNSAHWMHPAIRTALRDESRLISDRMKYLLYEVPVRVAGGLLFEL
Sbjct: 181 WWCHVTAGHPSVDAWLNSAHWMHPAIRTALRDESRLISDRMKYLLYEVPVRVAGGLLFEL 240
Query: 241 LGQSVGDPNREEEDIPIVLRSWQAQNFLVTAMHVKGPSSNINVLGVTEVQELLSAGGSQT 300
LGQSVGDPNREEEDIPIVLRSWQAQNFLVTAMHVKGPSSNINVLGVTEVQELLSAGGSQT
Sbjct: 241 LGQSVGDPNREEEDIPIVLRSWQAQNFLVTAMHVKGPSSNINVLGVTEVQELLSAGGSQT 300
Query: 301 PRSAHEVIAHLIGRLSRWDDRLFRKYVFGEADEIELKFVNRRNHEDLNLVSIILNQEIRR 360
PRSAHEVIAHLIGRLSRWDDRLFRKYVFGEADEIELKFVNRRNHEDLNLVSIILNQEIRR
Sbjct: 301 PRSAHEVIAHLIGRLSRWDDRLFRKYVFGEADEIELKFVNRRNHEDLNLVSIILNQEIRR 360
Query: 361 LATQVIRVKWSLHAREEIIIELLRHLRGNTTRVILDSIRKDTREMLEEQEAVRGRLFTIQ 420
LATQVIRVKWSLHAREEIIIELLRHLRGNTTRVILDSIRKDTREMLEEQEAVRGRLFTIQ
Sbjct: 361 LATQVIRVKWSLHAREEIIIELLRHLRGNTTRVILDSIRKDTREMLEEQEAVRGRLFTIQ 420
Query: 421 DVMQSTVRAWLQDRSLRITHNLAIFGGGGMVLSIITGLFGINVDGIPGAQNTPXXXXXXX 480
DVMQSTVRAWLQDRSLRITHNLAIFGGGGMVLSIITGLFGINVDGIPGAQNTP
Sbjct: 421 DVMQSTVRAWLQDRSLRITHNLAIFGGGGMVLSIITGLFGINVDGIPGAQNTPYAFGLFA 480
Query: 481 XXXXXXXXXXXXXXXXXXXXQNPVTNEKVKVRKLELQDLVSAFQHEAEQHGKVREGLXXX 540
QNPVTNEKVKVRKLELQDLVSAFQHEAEQHGKVREGL
Sbjct: 481 GLLFFVGFVLIGVGILYLGLQNPVTNEKVKVRKLELQDLVSAFQHEAEQHGKVREGLSRH 540
Query: 541 XXXXXXXXXXNVDYVLIS 558
NVDYVLIS
Sbjct: 541 SSSPKSSSASNVDYVLIS 558
>Os01g0601000 Conserved hypothetical protein
Length = 572
Score = 588 bits (1517), Expect = e-168, Method: Compositional matrix adjust.
Identities = 306/522 (58%), Positives = 367/522 (70%), Gaps = 48/522 (9%)
Query: 37 LWTDGLICAFELIKGH---------KKLVQHKSWPTIDSMQEKEVPMHMKRHISRNGHHV 87
LWTDGL+CAFE ++G L + K +Q K++ + +R
Sbjct: 51 LWTDGLVCAFEFVRGGGGAHGFVTPANLCRSK---CCSLLQSKDLAVQDRRR-------- 99
Query: 88 ATMKPEECDVVENPRQTEFANDPSLFKDRPVHVRAILDHKWVPIGWSRIAELVQRVQSDA 147
++ + D + PR A SL W PIGW RI +LV V DA
Sbjct: 100 -SLAAKIGDNGDEPRPPTVAPAESL---------------WAPIGWRRITQLVGMVGGDA 143
Query: 148 S-WDSEPAEMTDSE---------DDYTVADVAAPYWQRPVGPTWWCHVTAGHPSVDAWLN 197
+ W + M+ E DD TVADVAAPYWQR GPTWWCHV AGHP+VDAWL
Sbjct: 144 AAWHDDGQSMSLMEHDGGGDEQCDDITVADVAAPYWQRAAGPTWWCHVAAGHPAVDAWLA 203
Query: 198 SAHWMHPAIRTALRDESRLISDRMKYLLYEVPVRVAGGLLFELLGQSVGDPNREEEDIPI 257
+A W+HPAI ALRDES LIS++MK+LLYEVPVRVAGGLLFELLGQSVGDP R+EEDIPI
Sbjct: 204 AARWLHPAICVALRDESVLISEKMKHLLYEVPVRVAGGLLFELLGQSVGDPARDEEDIPI 263
Query: 258 VLRSWQAQNFLVTAMHVKGPSSNINVLGVTEVQELLSAGGSQ--TPRSAHEVIAHLIGRL 315
VLR+WQAQNFL+TA+HVKG + N+NV+GVTEVQELLSA GS P++ EVIAHL RL
Sbjct: 264 VLRAWQAQNFLITALHVKGSAPNVNVIGVTEVQELLSACGSTGTAPKNIQEVIAHLASRL 323
Query: 316 SRWDDRLFRKYVFGEADEIELKFVNRRNHEDLNLVSIILNQEIRRLATQVIRVKWSLHAR 375
+RWDDRL+RKYVFG ADEIELKFVNRR EDL L+ +I NQ+IRRLATQVIRVKWSLHAR
Sbjct: 324 ARWDDRLWRKYVFGAADEIELKFVNRRKQEDLKLLCMIFNQDIRRLATQVIRVKWSLHAR 383
Query: 376 EEIIIELLRHLRGNTTRVILDSIRKDTREMLEEQEAVRGRLFTIQDVMQSTVRAWLQDRS 435
EEII ELL++L G+TT+ +L++I+KD R+M+EEQEAVRGRLFTIQDVMQST+RAW Q++S
Sbjct: 384 EEIIFELLKYLGGSTTKSLLEAIKKDARQMIEEQEAVRGRLFTIQDVMQSTLRAWSQEKS 443
Query: 436 LRITHNLAIFGGGGMVLSIITGLFGINVDGIPGAQNTPXXXXXXXXXXXXXXXXXXXXXX 495
LRITHNL IFGG G+VLSII GLFGINVDGIPGA+NTP
Sbjct: 444 LRITHNLTIFGGCGLVLSIIAGLFGINVDGIPGAENTPYAFALFSALLFLVGLLLIIVGI 503
Query: 496 XXXXXQNPVTNEKVKVRKLELQDLVSAFQHEAEQHGKVREGL 537
Q P+++E+V+VRKLELQ+LVS FQHEAE H +V+EG+
Sbjct: 504 VYFGLQKPISDEQVQVRKLELQELVSMFQHEAETHARVKEGV 545
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,095,437
Number of extensions: 731850
Number of successful extensions: 1663
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1659
Number of HSP's successfully gapped: 2
Length of query: 558
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 452
Effective length of database: 11,501,117
Effective search space: 5198504884
Effective search space used: 5198504884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)