BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0661000 Os01g0661000|AK105412
         (405 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0661000  Protein of unknown function DUF588 family protein   412   e-115

>Os01g0661000 Protein of unknown function DUF588 family protein
          Length = 405

 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 230/405 (56%)

Query: 1   MASPIHSPPPEPATDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MASPIHSPPPEPATDGD                                           
Sbjct: 1   MASPIHSPPPEPATDGDDAQSHPPPPTPHPATDPPPISPQNPTPPPPPLPASAAAPTTPS 60

Query: 61  XNHSGDXXXXXXXXXXXXXXXXXXXXXXXXXHDNRTXXXXXXXXXXXXXXXXXXXXXXXX 120
            NHSGD                         HDNRT                        
Sbjct: 61  PNHSGDPSRPIPSQAPAPPPPPTADPSPPLPHDNRTPQPRAAPPPAPAPDQPAPPSPPPS 120

Query: 121 XXXXXXXXXXXESMLEREASEADGEPENMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 180
                      ESMLEREASEADGEPENM                              G
Sbjct: 121 LPPSPPAPGSPESMLEREASEADGEPENMTLALALAETETEKAMPPTPPKAAEAAESPTG 180

Query: 181 SPQKESALTIAKLLSGEDHAGTETKPVPEKXXXXXXXXXXXXXXXXXXXXXXXXXXXSKR 240
           SPQKESALTIAKLLSGEDHAGTETKPVPEK                           SKR
Sbjct: 181 SPQKESALTIAKLLSGEDHAGTETKPVPEKAAPAATTTTAAVASVGGGGGGGGGGVGSKR 240

Query: 241 WLLGGVPEKVRRSELRRAELGFRVLAAVFCLVSLSVMAADTTPGWSGDSFRRYNEYRYTL 300
           WLLGGVPEKVRRSELRRAELGFRVLAAVFCLVSLSVMAADTTPGWSGDSFRRYNEYRYTL
Sbjct: 241 WLLGGVPEKVRRSELRRAELGFRVLAAVFCLVSLSVMAADTTPGWSGDSFRRYNEYRYTL 300

Query: 301 SASVLAFTYSGFQLVVEVHYFVTGRRIIRDPSGKYFNLAMDQIXXXXXXXXXXXXXXRND 360
           SASVLAFTYSGFQLVVEVHYFVTGRRIIRDPSGKYFNLAMDQI              RND
Sbjct: 301 SASVLAFTYSGFQLVVEVHYFVTGRRIIRDPSGKYFNLAMDQILAYLLLSASSAALSRND 360

Query: 361 VWVSRFGVDQFAKLINASASMAFLAFVALGFSSIISAYHVFSSVF 405
           VWVSRFGVDQFAKLINASASMAFLAFVALGFSSIISAYHVFSSVF
Sbjct: 361 VWVSRFGVDQFAKLINASASMAFLAFVALGFSSIISAYHVFSSVF 405



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,643,243
Number of extensions: 197899
Number of successful extensions: 492
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 2
Length of query: 405
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 302
Effective length of database: 11,657,759
Effective search space: 3520643218
Effective search space used: 3520643218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)