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Os01g0661000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF588 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.99 (0.0215) R2 : 0.752
β1 : 1.34 (0.0787) R2dD : 0.164 R2D : 0.0924
β2 : 1.79 (0.0561) R2dC : 0.558 R2C : 0.507
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.612 (0.0459) R2dN8 : 0.13 R2N8 : 0.038
σ : 0.404
deviance : 74.38
__
_____
C
peak time of C : 18.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.38 0.374 9.04 1.18 1.62 -0.414 -0.694 0.0656 0.384 18.6 24.37 126 -- --
63.39 0.371 9.03 1.2 1.62 -0.413 -0.713 -- 0.391 18.5 24.39 127 -- --
64.54 0.374 9.04 1.18 1.62 -0.416 -- 0.117 0.382 18.6 24.37 127 -- --
64.56 0.374 9.03 1.2 1.63 -0.398 -- -- 0.405 18.5 24.4 191 -- --
145.99 0.563 9.08 0.86 -- -1.21 -- 0.669 0.0464 -- 25.6 352 -- --
73.39 0.402 8.98 1.34 1.8 -- -0.638 -- 0.615 18.2 -- -- -- --
74.38 0.404 8.99 1.34 1.79 -- -- -- 0.612 18.3 -- -- -- --
147.24 0.565 9.06 0.99 -- -1.18 -- -- 0.112 -- 25.7 354 -- --
102.9 0.472 9.04 -- 1.58 -0.472 -- -- 0.354 18.5 24.31 193 -- --
240.98 0.725 8.95 1.29 -- -- -- -- 0.573 -- -- -- -- --
121.9 0.516 9.02 -- 1.77 -- -- -- 0.463 18.3 -- -- -- --
172.14 0.611 9.1 -- -- -1.27 -- -- -0.0623 -- 25.2 339 -- --
285.17 0.788 8.99 -- -- -- -- -- 0.43 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 48.16 temperature 30.0 270 < th dose dependent rect. 1 8
6 50.41 temperature 10.0 270 > th dose dependent rect. 21 16
8 50.59 temperature 30.0 90 < th dose dependent rect. 3 18
15 51.65 temperature 30.0 270 < th dose dependent rect. 3 3
31 52.62 temperature 30.0 10 < th dose dependent rect. 5 17
32 52.71 temperature 30.0 270 < th dose dependent rect. 1 18
40 52.98 temperature 15.0 270 > th dose independent rect. 6 9
56 53.26 temperature 10.0 10 > th dose dependent rect. 23 17
66 53.49 temperature 30.0 90 < th dose dependent rect. 3 10
72 53.64 temperature 10.0 270 > th dose dependent rect. 6 8
89 54.11 temperature 10.0 90 > th dose dependent rect. 8 8
93 54.18 temperature 10.0 10 > th dose dependent rect. 8 8
96 54.29 temperature 25.0 270 < th dose independent rect. 1 8
99 54.33 wind 7.0 270 < th dose independent rect. 6 9
103 54.40 temperature 10.0 10 > th dose dependent rect. 8 21
105 54.42 temperature 10.0 90 > th dose dependent rect. 8 20
114 54.62 temperature 25.0 270 < th dose independent rect. 2 6
119 54.65 temperature 30.0 90 < th dose dependent rect. 3 12
138 54.88 temperature 10.0 270 > th dose dependent rect. 20 6
149 55.17 temperature 25.0 90 < th dose independent rect. 4 18
151 55.22 wind 5.0 270 < th dose independent rect. 20 6
156 55.26 precipitation 0.1 270 < th dose independent rect. 20 6
157 55.26 precipitation 0.1 270 < th dose dependent rect. 20 6
164 55.34 radiation 30.0 270 < th dose independent rect. 15 15
168 55.37 wind 5.0 270 < th dose independent rect. 3 3
169 55.41 wind 7.0 270 < th dose independent rect. 6 21
171 55.42 precipitation 0.1 270 < th dose independent rect. 19 8
172 55.42 precipitation 0.1 270 < th dose dependent rect. 19 8
175 55.54 temperature 10.0 90 > th dose dependent rect. 22 6
188 55.62 wind 7.0 270 < th dose independent rect. 8 18
189 55.63 precipitation 0.1 270 < th dose independent rect. 3 3
190 55.63 precipitation 0.1 270 < th dose dependent rect. 3 3
197 55.67 radiation 1.0 270 < th dose dependent rect. 20 6
198 55.68 temperature 10.0 270 > th dose independent rect. 20 6
199 55.68 temperature 30.0 270 < th dose independent rect. 20 6
200 55.68 humidity 50.0 270 > th dose independent rect. 20 6
203 55.68 atmosphere 995.0 270 > th dose independent rect. 20 6
204 55.68 radiation 1.0 270 < th dose independent rect. 20 6
209 55.68 temperature 10.0 270 > th dose independent rect. 2 18
210 55.68 atmosphere 1015.0 270 < th dose independent rect. 2 18
224 55.77 precipitation 0.1 270 < th dose independent rect. 6 21
225 55.77 precipitation 0.1 270 < th dose dependent rect. 6 21
228 55.81 radiation 1.0 270 > th dose independent rect. 6 9
232 55.83 wind 5.0 270 < th dose independent rect. 21 4
233 55.84 wind 9.0 270 < th dose independent rect. 19 8
234 55.84 radiation 1.0 270 < th dose dependent rect. 19 8
235 55.85 temperature 10.0 270 > th dose independent rect. 19 8
236 55.85 temperature 30.0 270 < th dose independent rect. 19 8
237 55.85 humidity 50.0 270 > th dose independent rect. 19 8
238 55.85 atmosphere 995.0 270 > th dose independent rect. 19 8
239 55.85 radiation 1.0 270 < th dose independent rect. 19 8
245 55.85 precipitation 0.1 270 < th dose independent rect. 6 9
246 55.85 temperature 10.0 270 > th dose independent rect. 3 16
247 55.85 atmosphere 1015.0 270 < th dose independent rect. 3 16
248 55.85 precipitation 0.1 270 < th dose independent rect. 2 18
253 55.85 precipitation 0.1 270 < th dose dependent rect. 6 9
254 55.85 precipitation 0.1 270 < th dose dependent rect. 2 18
278 56.00 atmosphere 1015.0 270 < th dose independent rect. 6 9
279 56.00 temperature 10.0 270 > th dose independent rect. 15 15
280 56.00 precipitation 0.1 270 < th dose independent rect. 3 16
281 56.00 precipitation 0.1 270 < th dose dependent rect. 3 16
334 56.20 wind 7.0 10 < th dose independent rect. 8 8
335 56.20 wind 9.0 270 < th dose independent rect. 15 15
339 56.23 atmosphere 995.0 270 > th dose independent rect. 6 9
341 56.23 temperature 25.0 270 < th dose independent rect. 1 18
346 56.26 wind 9.0 270 < th dose dependent rect. 3 3
350 56.28 wind 9.0 270 < th dose dependent rect. 20 6
354 56.31 temperature 20.0 270 > th dose independent rect. 21 16
357 56.33 precipitation 0.1 270 < th dose independent rect. 21 4
358 56.33 precipitation 0.1 270 < th dose dependent rect. 21 4
363 56.36 radiation 30.0 270 < th dose independent rect. 1 8
365 56.37 radiation 40.0 270 < th dose dependent rect. 2 7
366 56.39 wind 9.0 270 < th dose independent rect. 2 18
372 56.41 temperature 10.0 270 > th dose independent rect. 3 3
374 56.41 temperature 30.0 270 < th dose independent rect. 3 3
375 56.41 humidity 50.0 270 > th dose independent rect. 3 3
378 56.41 atmosphere 995.0 270 > th dose independent rect. 3 3
379 56.41 atmosphere 1015.0 270 < th dose independent rect. 3 3
380 56.41 radiation 20.0 270 < th dose independent rect. 3 3
383 56.41 temperature 10.0 270 > th dose independent rect. 6 21
384 56.41 radiation 1.0 270 < th dose dependent rect. 3 16
393 56.44 precipitation 0.1 270 < th dose independent rect. 1 7
394 56.44 precipitation 0.1 270 < th dose dependent rect. 1 7
397 56.48 precipitation 0.1 270 < th dose independent rect. 8 17
399 56.48 precipitation 0.1 270 < th dose dependent rect. 8 17
430 56.56 wind 5.0 270 < th dose independent rect. 2 5
432 56.56 humidity 90.0 90 < th dose independent rect. 8 8
450 56.61 atmosphere 995.0 270 > th dose independent rect. 2 18
463 56.64 radiation 40.0 270 < th dose dependent rect. 15 15
473 56.68 wind 7.0 270 < th dose independent rect. 21 16
474 56.68 temperature 15.0 270 > th dose independent rect. 8 17
479 56.69 temperature 10.0 270 > th dose independent rect. 21 4
480 56.69 temperature 30.0 270 < th dose independent rect. 21 4
481 56.69 humidity 50.0 270 > th dose independent rect. 21 4
484 56.69 atmosphere 995.0 270 > th dose independent rect. 21 4
485 56.69 radiation 1.0 270 < th dose independent rect. 21 4
492 56.69 temperature 10.0 270 > th dose independent rect. 1 20
493 56.69 radiation 1.0 270 < th dose dependent rect. 21 4
502 56.70 radiation 40.0 270 < th dose dependent rect. 3 3
506 56.75 humidity 80.0 90 > th dose independent rect. 22 6
510 56.76 wind 9.0 270 < th dose dependent rect. 7 19
513 56.79 wind 9.0 270 < th dose independent rect. 3 16
521 56.83 atmosphere 1015.0 270 < th dose independent rect. 1 20
522 56.83 wind 9.0 270 < th dose dependent rect. 21 4
533 56.87 precipitation 0.1 270 < th dose independent rect. 15 15
535 56.87 precipitation 0.1 270 < th dose dependent rect. 15 15
543 56.90 wind 7.0 270 < th dose independent rect. 1 7
551 56.92 wind 9.0 270 < th dose dependent rect. 7 8
553 56.93 temperature 15.0 270 > th dose independent rect. 7 19
561 56.95 radiation 20.0 270 < th dose independent rect. 2 6
566 56.96 temperature 10.0 90 > th dose independent rect. 22 6
567 56.96 temperature 30.0 90 < th dose independent rect. 22 6
568 56.96 humidity 50.0 90 > th dose independent rect. 22 6
571 56.96 atmosphere 995.0 90 > th dose independent rect. 22 6
572 56.96 radiation 1.0 90 < th dose independent rect. 22 6
581 56.96 radiation 1.0 90 < th dose dependent rect. 22 6
603 57.02 wind 1.0 270 > th dose independent rect. 20 6
664 57.09 precipitation 0.1 270 < th dose independent rect. 1 20
666 57.09 precipitation 0.1 270 < th dose dependent rect. 1 20
674 57.12 temperature 10.0 270 > th dose independent rect. 1 7
677 57.12 humidity 50.0 270 > th dose independent rect. 1 7
679 57.12 atmosphere 995.0 270 > th dose independent rect. 1 7
680 57.12 atmosphere 1015.0 270 < th dose independent rect. 1 7
710 57.20 atmosphere 995.0 270 > th dose independent rect. 15 15
713 57.21 radiation 40.0 90 < th dose independent rect. 4 18
717 57.22 radiation 1.0 270 < th dose independent rect. 3 16
720 57.23 temperature 30.0 90 < th dose dependent sin 3 NA
767 57.30 wind 7.0 10 < th dose independent rect. 8 21
785 57.32 humidity 50.0 270 > th dose independent rect. 2 17
795 57.33 temperature 10.0 10 > th dose dependent rect. 22 7
815 57.39 temperature 10.0 270 > th dose dependent rect. 23 1
820 57.40 radiation 20.0 10 < th dose dependent rect. 5 18
845 57.45 humidity 50.0 270 > th dose dependent rect. 20 6
853 57.48 wind 9.0 270 < th dose independent rect. 1 20
858 57.50 wind 5.0 270 < th dose independent rect. 23 1
865 57.51 humidity 50.0 270 > th dose independent rect. 6 9
869 57.51 radiation 1.0 10 < th dose dependent rect. 22 7
893 57.59 wind 9.0 270 < th dose dependent rect. 6 21
912 57.64 wind 7.0 10 < th dose independent rect. 22 7
914 57.64 temperature 10.0 10 > th dose independent rect. 22 7
915 57.64 temperature 30.0 10 < th dose independent rect. 22 7
916 57.64 humidity 50.0 10 > th dose independent rect. 22 7
919 57.64 atmosphere 995.0 10 > th dose independent rect. 22 7
920 57.64 radiation 1.0 10 < th dose independent rect. 22 7
926 57.64 temperature 10.0 10 > th dose independent rect. 5 17
928 57.64 atmosphere 1015.0 10 < th dose independent rect. 5 17
929 57.64 radiation 10.0 14400 < th dose dependent rect. 24 4
933 57.65 wind 9.0 270 < th dose dependent rect. 2 5
948 57.69 wind 9.0 90 < th dose dependent rect. 22 6
959 57.71 humidity 50.0 90 > th dose dependent rect. 22 6
975 57.74 radiation 40.0 1440 < th dose dependent rect. 23 6