BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0659800 Os01g0659800|AK109718
         (296 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0659800  C2 calcium/lipid-binding region, CaLB domain c...   471   e-133

>Os01g0659800 C2 calcium/lipid-binding region, CaLB domain containing protein
          Length = 296

 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/296 (82%), Positives = 244/296 (82%)

Query: 1   MMEAAPDEEAGLALPEGERILEVTLISAQGLKPPSGLRRRLLQAYAVAWVDAARRLQTRP 60
           MMEAAPDEEAGLALPEGERILEVTLISAQGLKPPSGLRRRLLQAYAVAWVDAARRLQTRP
Sbjct: 1   MMEAAPDEEAGLALPEGERILEVTLISAQGLKPPSGLRRRLLQAYAVAWVDAARRLQTRP 60

Query: 61  DRAGGVDPEWHERLLFRVHEAALADDSRAAVTVEIYAAPAGGWHIGGDSLVGSARFLLGD 120
           DRAGGVDPEWHERLLFRVHEAALADDSRAAVTVEIYAAPAGGWHIGGDSLVGSARFLLGD
Sbjct: 61  DRAGGVDPEWHERLLFRVHEAALADDSRAAVTVEIYAAPAGGWHIGGDSLVGSARFLLGD 120

Query: 121 HGLLSRPVGSPSMFAVGVRRPSGRVHGXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSGLS 180
           HGLLSRPVGSPSMFAVGVRRPSGRVHG                           SLSGLS
Sbjct: 121 HGLLSRPVGSPSMFAVGVRRPSGRVHGLLNVAASLVAAPPSPAAAHALRSSPAVSLSGLS 180

Query: 181 TAPIPAGRVLRVLNRSFXXXXXXXXXXXXKKQQIAAKPNKKCADKLDVAVKLNNGAXXXX 240
           TAPIPAGRVLRVLNRSF            KKQQIAAKPNKKCADKLDVAVKLNNGA    
Sbjct: 181 TAPIPAGRVLRVLNRSFPTPPPSPTVLTTKKQQIAAKPNKKCADKLDVAVKLNNGADDRS 240

Query: 241 XXXXXXXXXMGGVVFCGPCILPLPRKIHISPSDENLQAFASIFSGGVGITRQSPRH 296
                    MGGVVFCGPCILPLPRKIHISPSDENLQAFASIFSGGVGITRQSPRH
Sbjct: 241 DEEREELREMGGVVFCGPCILPLPRKIHISPSDENLQAFASIFSGGVGITRQSPRH 296



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,458,552
Number of extensions: 386878
Number of successful extensions: 744
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 196
Effective length of database: 11,814,401
Effective search space: 2315622596
Effective search space used: 2315622596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)