BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0655500 Os01g0655500|AK120660
         (650 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0655500  Protein kinase-like domain containing protein      1174   0.0  

>Os01g0655500 Protein kinase-like domain containing protein
          Length = 650

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/622 (92%), Positives = 573/622 (92%)

Query: 29  SARPCRRRGFRXXXXXXXXXXXXXXXDEGAGAGPCPVVRFEMGDFDVADRVSVGLHGRSD 88
           SARPCRRRGFR               DEGAGAGPCPVVRFEMGDFDVADRVSVGLHGRSD
Sbjct: 29  SARPCRRRGFRAEASSSASTPAPVAADEGAGAGPCPVVRFEMGDFDVADRVSVGLHGRSD 88

Query: 89  EMIFEATVRDPSSELYGSTVVLRQLMSFQAKRRGRRALEVLKKLARRQMMYHSYAMQVHG 148
           EMIFEATVRDPSSELYGSTVVLRQLMSFQAKRRGRRALEVLKKLARRQMMYHSYAMQVHG
Sbjct: 89  EMIFEATVRDPSSELYGSTVVLRQLMSFQAKRRGRRALEVLKKLARRQMMYHSYAMQVHG 148

Query: 149 YVTPGNDVEQDDGSFILVHGYHGSYSLRHWLQLSDWLPTLEATLALDEEQVRRVGDDSVG 208
           YVTPGNDVEQDDGSFILVHGYHGSYSLRHWLQLSDWLPTLEATLALDEEQVRRVGDDSVG
Sbjct: 149 YVTPGNDVEQDDGSFILVHGYHGSYSLRHWLQLSDWLPTLEATLALDEEQVRRVGDDSVG 208

Query: 209 GPAVTRQXXXXXXXXXXXXXGVNYLHSHGLAHTELRLENVHVSPIDKHVKVGILGNAVDF 268
           GPAVTRQ             GVNYLHSHGLAHTELRLENVHVSPIDKHVKVGILGNAVDF
Sbjct: 209 GPAVTRQLRLIRILMRDLLIGVNYLHSHGLAHTELRLENVHVSPIDKHVKVGILGNAVDF 268

Query: 269 HDNDPRNSTLASNDERRKMMIAFDMRCVGFIMAKMVLRELMDSSTFLKFKSFLTKGDDPA 328
           HDNDPRNSTLASNDERRKMMIAFDMRCVGFIMAKMVLRELMDSSTFLKFKSFLTKGDDPA
Sbjct: 269 HDNDPRNSTLASNDERRKMMIAFDMRCVGFIMAKMVLRELMDSSTFLKFKSFLTKGDDPA 328

Query: 329 CLREFLLPILCRNSPSGNIGLQMLDRQWGAGWNXXXXXXXTKPDKRISCVDALRHPFLCG 388
           CLREFLLPILCRNSPSGNIGLQMLDRQWGAGWN       TKPDKRISCVDALRHPFLCG
Sbjct: 329 CLREFLLPILCRNSPSGNIGLQMLDRQWGAGWNLLALLLATKPDKRISCVDALRHPFLCG 388

Query: 389 PKWRINPSVDVIRWGLGSTAVRMAEDYIYGQHQRRRLAYFVELMEVLNPNPRTENWLNIL 448
           PKWRINPSVDVIRWGLGSTAVRMAEDYIYGQHQRRRLAYFVELMEVLNPNPRTENWLNIL
Sbjct: 389 PKWRINPSVDVIRWGLGSTAVRMAEDYIYGQHQRRRLAYFVELMEVLNPNPRTENWLNIL 448

Query: 449 PGHWRLLYCTGRHIGLTLRQPSPRILITDVFLTFAQTSDSIDPVFSLTSDIGFKIMAESD 508
           PGHWRLLYCTGRHIGLTLRQPSPRILITDVFLTFAQTSDSIDPVFSLTSDIGFKIMAESD
Sbjct: 449 PGHWRLLYCTGRHIGLTLRQPSPRILITDVFLTFAQTSDSIDPVFSLTSDIGFKIMAESD 508

Query: 509 WPHDKSGSEGTLSVTSSARIATGRIYIHEQDGDDXXXXXXXXXXXXXXGKWRKVSKMKEL 568
           WPHDKSGSEGTLSVTSSARIATGRIYIHEQDGDD              GKWRKVSKMKEL
Sbjct: 509 WPHDKSGSEGTLSVTSSARIATGRIYIHEQDGDDSRVASSRSSRRYLRGKWRKVSKMKEL 568

Query: 569 PASLPTVNITMDELDVSMSCSSTLNVSSAQKVLQEIRTQTPPEMFDLSKIVCGTYVDARL 628
           PASLPTVNITMDELDVSMSCSSTLNVSSAQKVLQEIRTQTPPEMFDLSKIVCGTYVDARL
Sbjct: 569 PASLPTVNITMDELDVSMSCSSTLNVSSAQKVLQEIRTQTPPEMFDLSKIVCGTYVDARL 628

Query: 629 MILRGVNGSALFFTRSNSRADS 650
           MILRGVNGSALFFTRSNSRADS
Sbjct: 629 MILRGVNGSALFFTRSNSRADS 650



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,495,122
Number of extensions: 829299
Number of successful extensions: 1658
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1658
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 543
Effective length of database: 11,448,903
Effective search space: 6216754329
Effective search space used: 6216754329
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)