BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0655400 Os01g0655400|AK068171
(1350 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0655400 Conserved hypothetical protein 2125 0.0
>Os01g0655400 Conserved hypothetical protein
Length = 1350
Score = 2125 bits (5507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1044/1090 (95%), Positives = 1044/1090 (95%)
Query: 261 YDSKHERYDDGGAKKNGSKASRGEEDGYSYKRDTEINASATKEKYNNTEKDLDRHSRRKD 320
YDSKHERYDDGGAKKNGSKASRGEEDGYSYKRDTEINASATKEKYNNTEKDLDRHSRRKD
Sbjct: 261 YDSKHERYDDGGAKKNGSKASRGEEDGYSYKRDTEINASATKEKYNNTEKDLDRHSRRKD 320
Query: 321 VSEDKDKWPAENRDGDDRKTLSRYDHSKVRSSKEQRFXXXXXXXXXXXXXXXXXXQQDDK 380
VSEDKDKWPAENRDGDDRKTLSRYDHSKVRSSKEQRF QQDDK
Sbjct: 321 VSEDKDKWPAENRDGDDRKTLSRYDHSKVRSSKEQRFDDDKYKEKYKDDYERDKRQQDDK 380
Query: 381 CLDERLTRDHESDRADYKSSKDGHRTSESHYRKDVIQEPDHYDDYGSRYKESRGRKRPPE 440
CLDERLTRDHESDRADYKSSKDGHRTSESHYRKDVIQEPDHYDDYGSRYKESRGRKRPPE
Sbjct: 381 CLDERLTRDHESDRADYKSSKDGHRTSESHYRKDVIQEPDHYDDYGSRYKESRGRKRPPE 440
Query: 441 ENDDQYDLKPPSAREQRGSADKSSGSGRLDALVERMRSDHRHPENVDSSPNKVHPRSSPG 500
ENDDQYDLKPPSAREQRGSADKSSGSGRLDALVERMRSDHRHPENVDSSPNKVHPRSSPG
Sbjct: 441 ENDDQYDLKPPSAREQRGSADKSSGSGRLDALVERMRSDHRHPENVDSSPNKVHPRSSPG 500
Query: 501 PNTYHDKDQNWHGSKLTDHAKREIPYDERNIRPRTSSGRERTPASRLRDRDADNRPSERL 560
PNTYHDKDQNWHGSKLTDHAKREIPYDERNIRPRTSSGRERTPASRLRDRDADNRPSERL
Sbjct: 501 PNTYHDKDQNWHGSKLTDHAKREIPYDERNIRPRTSSGRERTPASRLRDRDADNRPSERL 560
Query: 561 KQKDDLQSRDMQLEISSSLQYDRTPRKDAHPSPKHLSERSPTEQRFSGRLSGGRSTDNKA 620
KQKDDLQSRDMQLEISSSLQYDRTPRKDAHPSPKHLSERSPTEQRFSGRLSGGRSTDNKA
Sbjct: 561 KQKDDLQSRDMQLEISSSLQYDRTPRKDAHPSPKHLSERSPTEQRFSGRLSGGRSTDNKA 620
Query: 621 ERSGLTKYRDRDGDSVERSVHQDRTPAKAPYREPTPSSSSRGGHFSGTXXXXXXXXXXXX 680
ERSGLTKYRDRDGDSVERSVHQDRTPAKAPYREPTPSSSSRGGHFSGT
Sbjct: 621 ERSGLTKYRDRDGDSVERSVHQDRTPAKAPYREPTPSSSSRGGHFSGTSPNHPLPPPPRH 680
Query: 681 XXXXXXFLGLHDDDRRPQSGDRRFHQKRNDMSSGRGHGHAWNNPPSWPSPVANGFVPMQH 740
FLGLHDDDRRPQSGDRRFHQKRNDMSSGRGHGHAWNNPPSWPSPVANGFVPMQH
Sbjct: 681 RSDDSSFLGLHDDDRRPQSGDRRFHQKRNDMSSGRGHGHAWNNPPSWPSPVANGFVPMQH 740
Query: 741 GVPGFHPPVHQFSAPPMFNLRPQMKLNQPGVSYPMHESVDRFSTHMRPFGWPNPLDESCP 800
GVPGFHPPVHQFSAPPMFNLRPQMKLNQPGVSYPMHESVDRFSTHMRPFGWPNPLDESCP
Sbjct: 741 GVPGFHPPVHQFSAPPMFNLRPQMKLNQPGVSYPMHESVDRFSTHMRPFGWPNPLDESCP 800
Query: 801 PHLQVWNGGSGVFASEPYMYGRQEWDQNRQHSVSRGWETTGDALKGQNELHEREPSVTKK 860
PHLQVWNGGSGVFASEPYMYGRQEWDQNRQHSVSRGWETTGDALKGQNELHEREPSVTKK
Sbjct: 801 PHLQVWNGGSGVFASEPYMYGRQEWDQNRQHSVSRGWETTGDALKGQNELHEREPSVTKK 860
Query: 861 EPDCSATPVPETSTGQYNLNSRIEQKEMDQTLEKNGTKDDLKSSFRNTGGSGGAPLMTSM 920
EPDCSATPVPETSTGQYNLNSRIEQKEMDQTLEKNGTKDDLKSSFRNTGGSGGAPLMTSM
Sbjct: 861 EPDCSATPVPETSTGQYNLNSRIEQKEMDQTLEKNGTKDDLKSSFRNTGGSGGAPLMTSM 920
Query: 921 PSNSGTAIFSKSYLSKISVSRDLVESELYKRCISLLADFGIANTPEVVGTGLVQNNGSFG 980
PSNSGTAIFSKSYLSKISVSRDLVESELYKRCISLLADFGIANTPEVVGTGLVQNNGSFG
Sbjct: 921 PSNSGTAIFSKSYLSKISVSRDLVESELYKRCISLLADFGIANTPEVVGTGLVQNNGSFG 980
Query: 981 KINRKLGTPNLLGSHNLKNKSDIFQRALALHKNQTAKIVSPTHSILETDRKTYLPEDNHD 1040
KINRKLGTPNLLGSHNLKNKSDIFQRALALHKNQTAKIVSPTHSILETDRKTYLPEDNHD
Sbjct: 981 KINRKLGTPNLLGSHNLKNKSDIFQRALALHKNQTAKIVSPTHSILETDRKTYLPEDNHD 1040
Query: 1041 DTEMTDHTVSKELLVDNSEPHHGADTMEKELPLRQELAGGIGVTSPASIEPGNVGAPPVI 1100
DTEMTDHTVSKELLVDNSEPHHGADTMEKELPLRQELAGGIGVTSPASIEPGNVGAPPVI
Sbjct: 1041 DTEMTDHTVSKELLVDNSEPHHGADTMEKELPLRQELAGGIGVTSPASIEPGNVGAPPVI 1100
Query: 1101 IEPDVGMEDVAPPKIVEPDEGMEDAAPPKIVEPDEGMEDAAPPKIVEPDQGMEEVASPTI 1160
IEPDVGMEDVAPPKIVEPDEGMEDAAPPKIVEPDEGMEDAAPPKIVEPDQGMEEVASPTI
Sbjct: 1101 IEPDVGMEDVAPPKIVEPDEGMEDAAPPKIVEPDEGMEDAAPPKIVEPDQGMEEVASPTI 1160
Query: 1161 KEPDEDIEVMPLGTAEPGKGMEEVAPGGISEPEKGMENLVPPGIAEPVKDGMDDVXXXXX 1220
KEPDEDIEVMPLGTAEPGKGMEEVAPGGISEPEKGMENLVPPGIAEPVKDGMDDV
Sbjct: 1161 KEPDEDIEVMPLGTAEPGKGMEEVAPGGISEPEKGMENLVPPGIAEPVKDGMDDVAAPSA 1220
Query: 1221 XXXXXLGDGVPEVTVELADSAQEKPPAMGELGDGMEVMPPPVTETSLGKEDSPAVPSSPE 1280
LGDGVPEVTVELADSAQEKPPAMGELGDGMEVMPPPVTETSLGKEDSPAVPSSPE
Sbjct: 1221 GPAAGLGDGVPEVTVELADSAQEKPPAMGELGDGMEVMPPPVTETSLGKEDSPAVPSSPE 1280
Query: 1281 VQEIVSGMHAGIEKGMEGETDNLIDDNPGDGEVNASSLELDVASGADDCEALVESRVNLS 1340
VQEIVSGMHAGIEKGMEGETDNLIDDNPGDGEVNASSLELDVASGADDCEALVESRVNLS
Sbjct: 1281 VQEIVSGMHAGIEKGMEGETDNLIDDNPGDGEVNASSLELDVASGADDCEALVESRVNLS 1340
Query: 1341 RIPNSPESTH 1350
RIPNSPESTH
Sbjct: 1341 RIPNSPESTH 1350
Score = 167 bits (423), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/113 (76%), Positives = 86/113 (76%)
Query: 60 GKEVVSSGNGYAEHGRKRKDRVEEMVVDVVSDRWNSGVCEDHLVEKRSKGEVFGPVDVDK 119
GKEVVSSGNGYAEHGRKRKDRVEEMVVDVVSDRWNSGVCEDHLVEKRSKGEVFGPVDVDK
Sbjct: 60 GKEVVSSGNGYAEHGRKRKDRVEEMVVDVVSDRWNSGVCEDHLVEKRSKGEVFGPVDVDK 119
Query: 120 LPEKSRGSGDEXXXXXXXXXXXXXXAEEVVXXXXXXXXXXXXXLGRRESSGQY 172
LPEKSRGSGDE AEEVV LGRRESSGQY
Sbjct: 120 LPEKSRGSGDESKRSSRRMVSMDDRAEEVVSKSDSGKRRSDKDLGRRESSGQY 172
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.308 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 48,462,803
Number of extensions: 2388553
Number of successful extensions: 6755
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6733
Number of HSP's successfully gapped: 2
Length of query: 1350
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1237
Effective length of database: 11,135,619
Effective search space: 13774760703
Effective search space used: 13774760703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 162 (67.0 bits)