Os01g0655400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0655400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.33 | 0.184 | 10.1 | 1.16 | 0.165 | 0.0395 | -0.452 | -1.1 | 0.11 | 6.76 | 0.1111 | 5728 | -- | -- |
| 16.77 | 0.191 | 10.1 | 1.14 | 0.116 | 0.338 | -0.486 | -- | 0.127 | 6.58 | 0.0596 | 19642 | -- | -- |
| 15.4 | 0.183 | 10.1 | 1.13 | 0.153 | 0.0698 | -- | -1.25 | 0.101 | 6.73 | 0.03189 | 7963 | -- | -- |
| 16.88 | 0.191 | 10.1 | 1.14 | 0.116 | 0.347 | -- | -- | 0.128 | 6.41 | 0.09872 | 15371 | -- | -- |
| 15.99 | 0.186 | 10.1 | 1.16 | -- | 0.29 | -- | -1.11 | 0.122 | -- | 0.8679 | 8007 | -- | -- |
| 17.63 | 0.197 | 10.1 | 0.895 | 0.167 | -- | -0.459 | -- | 0.0381 | 6.79 | -- | -- | -- | -- |
| 18.16 | 0.2 | 10.1 | 0.887 | 0.165 | -- | -- | -- | 0.0393 | 6.82 | -- | -- | -- | -- |
| 16.74 | 0.191 | 10.1 | 1.07 | -- | 0.482 | -- | -- | 0.134 | -- | 0.004784 | 8007 | -- | -- |
| 36.08 | 0.28 | 10.1 | -- | 0.185 | 0.305 | -- | -- | 0.00532 | 6.29 | 40 | 31210 | -- | -- |
| 19.59 | 0.207 | 10.1 | 0.891 | -- | -- | -- | -- | 0.0425 | -- | -- | -- | -- | -- |
| 38.91 | 0.292 | 10.1 | -- | 0.176 | -- | -- | -- | -0.0595 | 6.52 | -- | -- | -- | -- |
| 22.66 | 0.222 | 10.1 | -- | -- | 0.806 | -- | -- | -0.159 | -- | 66.65 | 46772 | -- | -- |
| 40.53 | 0.297 | 10.1 | -- | -- | -- | -- | -- | -0.0563 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.56 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 2 | 14.57 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 19 | 14.60 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 20 | 14.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 7 |
| 35 | 14.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 57 | 14.65 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 3 | NA |
| 81 | 14.66 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 94 | 14.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 99 | 14.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 130 | 14.68 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 3 | NA |
| 135 | 14.68 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 148 | 14.68 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 187 | 14.69 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 218 | 14.69 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 267 | 14.70 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 315 | 14.71 | atmosphere | 1005 | 43200 | < th | dose independent | no | NA | NA |
| 334 | 14.71 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 371 | 14.71 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 392 | 14.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 470 | 14.73 | atmosphere | 1005 | 43200 | > th | dose independent | no | NA | NA |
| 509 | 14.73 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 20 |
| 539 | 14.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 596 | 14.74 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 598 | 14.74 | humidity | 90 | 14400 | > th | dose dependent | sin | 10 | NA |
| 614 | 14.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 712 | 14.76 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 755 | 14.77 | atmosphere | 1010 | 43200 | < th | dose dependent | sin | 8 | NA |
| 759 | 14.77 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 760 | 14.77 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 768 | 14.77 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 775 | 14.77 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 831 | 14.78 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 860 | 14.78 | atmosphere | 1010 | 43200 | < th | dose dependent | no | NA | NA |
| 863 | 14.78 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 901 | 14.78 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 927 | 14.78 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 6 | 18 |
| 979 | 14.78 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 23 | 23 |
| 999 | 14.79 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 17 | 10 |