BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0647000 Os01g0647000|AK101723
         (418 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0647000  Cyclin-like F-box domain containing protein         640   0.0  

>Os01g0647000 Cyclin-like F-box domain containing protein
          Length = 418

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/418 (78%), Positives = 330/418 (78%)

Query: 1   MSDHHHLTGDHHXXXXXXXXXXXXXXXXXXXXXXHDILIRLALPELLRVRSVARPLSHVI 60
           MSDHHHLTGDHH                      HDILIRLALPELLRVRSVARPLSHVI
Sbjct: 1   MSDHHHLTGDHHPSPASAATTALGPLLLLPSELLHDILIRLALPELLRVRSVARPLSHVI 60

Query: 61  SSPDFRRLYHLXXXXXXXXXXXXWLLVFKKLRPRDAALRGFHGPSGRWFRIPVSAILAPA 120
           SSPDFRRLYHL            WLLVFKKLRPRDAALRGFHGPSGRWFRIPVSAILAPA
Sbjct: 61  SSPDFRRLYHLSSAASGPGPAAAWLLVFKKLRPRDAALRGFHGPSGRWFRIPVSAILAPA 120

Query: 121 VPPGEDXXXXXXXXXXXXXXXNGRRELVVVDLSAHAAXXXXXXXXXXXXXXXWRRFGLKL 180
           VPPGED               NGRRELVVVDLSAHAA               WRRFGLKL
Sbjct: 121 VPPGEDLYFLAASGSSFLFAANGRRELVVVDLSAHAARRLPPSPLGPRGTSSWRRFGLKL 180

Query: 181 VADPPGSSQFRFLFAELVNNTPLLFEYQSETDTWQSSEAVQXXXXXXXXXXXXXFLCAAH 240
           VADPPGSSQFRFLFAELVNNTPLLFEYQSETDTWQSSEAVQ             FLCAAH
Sbjct: 181 VADPPGSSQFRFLFAELVNNTPLLFEYQSETDTWQSSEAVQAEGASTAAGTEGTFLCAAH 240

Query: 241 AGPDCVMVYSGPGVERPVFFRPRFPHNPNGGGDRLHVYGDGSAAVVRSTVIDEPGRPRVK 300
           AGPDCVMVYSGPGVERPVFFRPRFPHNPNGGGDRLHVYGDGSAAVVRSTVIDEPGRPRVK
Sbjct: 241 AGPDCVMVYSGPGVERPVFFRPRFPHNPNGGGDRLHVYGDGSAAVVRSTVIDEPGRPRVK 300

Query: 301 VVAGVDLYGFGSVVGGDWQLASTVPGELVEGFRKPYAVMTGLLSEREGVVRLVLISNCRG 360
           VVAGVDLYGFGSVVGGDWQLASTVPGELVEGFRKPYAVMTGLLSEREGVVRLVLISNCRG
Sbjct: 301 VVAGVDLYGFGSVVGGDWQLASTVPGELVEGFRKPYAVMTGLLSEREGVVRLVLISNCRG 360

Query: 361 AWDIVWLSYDRARGEWWWVPVPDWGTKGLNVAGIAVSSTFSRLWPPXXXXXXXXXXXQ 418
           AWDIVWLSYDRARGEWWWVPVPDWGTKGLNVAGIAVSSTFSRLWPP           Q
Sbjct: 361 AWDIVWLSYDRARGEWWWVPVPDWGTKGLNVAGIAVSSTFSRLWPPAAASSCTTTTSQ 418



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.141    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,134,424
Number of extensions: 533144
Number of successful extensions: 1071
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1070
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 315
Effective length of database: 11,657,759
Effective search space: 3672194085
Effective search space used: 3672194085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)