BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0645900 Os01g0645900|AK100928
         (463 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0645900  Conserved hypothetical protein                      769   0.0  
AK120646                                                          213   2e-55

>Os01g0645900 Conserved hypothetical protein
          Length = 463

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/463 (88%), Positives = 412/463 (88%)

Query: 1   MASSAGDPLLSGEAGDGRRRFVPSTIRLKTSVWSELGGAVGDLGTYIPIVLALSLASHLD 60
           MASSAGDPLLSGEAGDGRRRFVPSTIRLKTSVWSELGGAVGDLGTYIPIVLALSLASHLD
Sbjct: 1   MASSAGDPLLSGEAGDGRRRFVPSTIRLKTSVWSELGGAVGDLGTYIPIVLALSLASHLD 60

Query: 61  LGTTLIFTALYNFATGLLFGIPMPVQPMKSIAAVALSSAHLTIPQIMSAGLAVAAILLFL 120
           LGTTLIFTALYNFATGLLFGIPMPVQPMKSIAAVALSSAHLTIPQIMSAGLAVAAILLFL
Sbjct: 61  LGTTLIFTALYNFATGLLFGIPMPVQPMKSIAAVALSSAHLTIPQIMSAGLAVAAILLFL 120

Query: 121 GVTGLMTTLYRLLPLPVVRGVQLSQGLSFAFTAVKYIRYVQDFXXXXXXXXXVPRPXXXX 180
           GVTGLMTTLYRLLPLPVVRGVQLSQGLSFAFTAVKYIRYVQDF         VPRP    
Sbjct: 121 GVTGLMTTLYRLLPLPVVRGVQLSQGLSFAFTAVKYIRYVQDFSRSSSASTSVPRPLLGL 180

Query: 181 XXXXXXXXXXXXXXXXTGSGDDEDVNRDGTSRRRRSCSRVPAALIVFALGLVLCFVRDPS 240
                           TGSGDDEDVNRDGTSRRRRSCSRVPAALIVFALGLVLCFVRDPS
Sbjct: 181 DGLVLALAALLFIILATGSGDDEDVNRDGTSRRRRSCSRVPAALIVFALGLVLCFVRDPS 240

Query: 241 ILQDLRFGPAPLGLVKITWDDFKIGFWEGAVPQLPLSVLNSVIAVCKLSSDLFPERAELS 300
           ILQDLRFGPAPLGLVKITWDDFKIGFWEGAVPQLPLSVLNSVIAVCKLSSDLFPERAELS
Sbjct: 241 ILQDLRFGPAPLGLVKITWDDFKIGFWEGAVPQLPLSVLNSVIAVCKLSSDLFPERAELS 300

Query: 301 PARVSVSVGLMNFVGCWFGAMPCCHGAGGLAGQYRFGGRTGASVVFLAIGKLALGLVFGN 360
           PARVSVSVGLMNFVGCWFGAMPCCHGAGGLAGQYRFGGRTGASVVFLAIGKLALGLVFGN
Sbjct: 301 PARVSVSVGLMNFVGCWFGAMPCCHGAGGLAGQYRFGGRTGASVVFLAIGKLALGLVFGN 360

Query: 361 SFVTILGQFPIGILGVMLLFSGIELAMASRDMGSKQESFVMLVCAGVSLTGSSAALGFIS 420
           SFVTILGQFPIGILGVMLLFSGIELAMASRDMGSKQESFVMLVCAGVSLTGSSAALGFIS
Sbjct: 361 SFVTILGQFPIGILGVMLLFSGIELAMASRDMGSKQESFVMLVCAGVSLTGSSAALGFIS 420

Query: 421 GIVXXXXXXXXXXEWDIXXXXXXXXXXXXQSTNEANEDGAGDA 463
           GIV          EWDI            QSTNEANEDGAGDA
Sbjct: 421 GIVLYLLLRLRDLEWDIRGLLGRWAAGRRQSTNEANEDGAGDA 463



>AK120646 
          Length = 167

 Score =  213 bits (542), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MASSAGDPLLSGEAGDGRRRFVPSTIRLKTSVWSELGGAVGDLGTYIPIVLALSLASHLD 60
           MASSAGDPLLSGEAGDGRRRFVPSTIRLKTSVWSELGGAVGDLGTYIPIVLALSLASHLD
Sbjct: 1   MASSAGDPLLSGEAGDGRRRFVPSTIRLKTSVWSELGGAVGDLGTYIPIVLALSLASHLD 60

Query: 61  LGTTLIFTALYNFATGLLFGIPMPVQPMKSIAAVALSSAHLTIPQIMS 108
           LGTTLIFTALYNFATGLLFGIPMPVQPMKSIAAVALSSAHLTIPQIMS
Sbjct: 61  LGTTLIFTALYNFATGLLFGIPMPVQPMKSIAAVALSSAHLTIPQIMS 108



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,999,870
Number of extensions: 570313
Number of successful extensions: 1752
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1751
Number of HSP's successfully gapped: 2
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 158 (65.5 bits)