BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0631200 Os01g0631200|AK072497
         (164 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0631200  Similar to Uroporphyrinogen III methyltransferase   334   1e-92
AK111218                                                           78   2e-15

>Os01g0631200 Similar to Uroporphyrinogen III methyltransferase
          Length = 164

 Score =  334 bits (857), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MDFLQQQGIRVEVIPGITSASGIAAELGIPLTHRGVATSVRFLTGHSRNGGPDPLYVAEN 60
           MDFLQQQGIRVEVIPGITSASGIAAELGIPLTHRGVATSVRFLTGHSRNGGPDPLYVAEN
Sbjct: 1   MDFLQQQGIRVEVIPGITSASGIAAELGIPLTHRGVATSVRFLTGHSRNGGPDPLYVAEN 60

Query: 61  AADPDTTLVVYMGLSTLPSLAPKLMKHGLPPDTPAVAVERGTTPQQRMVFAMLKDFVNEV 120
           AADPDTTLVVYMGLSTLPSLAPKLMKHGLPPDTPAVAVERGTTPQQRMVFAMLKDFVNEV
Sbjct: 61  AADPDTTLVVYMGLSTLPSLAPKLMKHGLPPDTPAVAVERGTTPQQRMVFAMLKDFVNEV 120

Query: 121 KSEDLVSPTLIIIGKVVALSPFWIDSSKQGAQSIENLYAAETKR 164
           KSEDLVSPTLIIIGKVVALSPFWIDSSKQGAQSIENLYAAETKR
Sbjct: 121 KSEDLVSPTLIIIGKVVALSPFWIDSSKQGAQSIENLYAAETKR 164



>AK111218 
          Length = 541

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 2   DFLQQQGIRVEVIPGITSASGIAAELGIPLTHRGVATSVRFLTGHSRNGGP--DPLYVAE 59
           DF +  G    V+PGITSA        IP THRGVA  V   TG  R G P   P +VA 
Sbjct: 371 DFFRAHGFIPSVLPGITSALSAPLFAAIPATHRGVADQVLICTGTGRKGAPLDPPEFVAS 430

Query: 60  NAADPDTTLVVYMGLSTLPSLAPKLMKHGLPPDTPAVAVERGTTPQQRMVFAMLKDFVNE 119
                  TLV+ M L  L  L   L K G P D P   +ER +   QR++   L+     
Sbjct: 431 R------TLVLLMSLHRLSGLVDDLTKKGYPKDLPVAVLERASCSDQRVIRTSLEHVCAA 484

Query: 120 VKSEDLVSPTLIIIGKVV 137
           V+ E    P L+++G   
Sbjct: 485 VEEEGSRPPGLLVVGNAC 502



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,605,654
Number of extensions: 236304
Number of successful extensions: 548
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 2
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)