Os01g0631200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Uroporphyrinogen III methyltransferase.
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Os01g0631200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Uroporphyrinogen III methyltransferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 247.78 | 0.74 | 8.3 | -1.86 | 0.246 | 0.771 | 2.63 | 0.969 | -1.23 | 17 | 12.4 | 7 | -- | -- |
| 249.56 | 0.736 | 8.3 | -1.84 | 0.196 | 0.756 | 3.06 | -- | -1.22 | 15.9 | 12.42 | 6 | -- | -- |
| 263.09 | 0.755 | 8.32 | -1.97 | 0.382 | 0.967 | -- | 1.35 | -1.21 | 19 | 12.45 | 6 | -- | -- |
| 272.6 | 0.769 | 8.3 | -1.79 | 0.383 | 0.987 | -- | -- | -1.2 | 19.4 | 12.4 | 7 | -- | -- |
| 268.13 | 0.763 | 8.29 | -1.84 | -- | 0.842 | -- | 1.45 | -1.18 | -- | 12.4 | 6 | -- | -- |
| 284.85 | 0.791 | 8.3 | -1.82 | 0.738 | -- | 2.8 | -- | -1.23 | 14.5 | -- | -- | -- | -- |
| 311.9 | 0.827 | 8.29 | -1.75 | 0.746 | -- | -- | -- | -1.21 | 13.8 | -- | -- | -- | -- |
| 278.7 | 0.778 | 8.29 | -1.82 | -- | 0.834 | -- | -- | -1.22 | -- | 12.45 | 6 | -- | -- |
| 359.28 | 0.883 | 8.25 | -- | 0.374 | 0.897 | -- | -- | -1.01 | 19.6 | 12.5 | 7 | -- | -- |
| 345.72 | 0.869 | 8.29 | -1.78 | -- | -- | -- | -- | -1.23 | -- | -- | -- | -- | -- |
| 392.71 | 0.927 | 8.24 | -- | 0.778 | -- | -- | -- | -1.02 | 13.8 | -- | -- | -- | -- |
| 366.3 | 0.891 | 8.25 | -- | -- | 0.811 | -- | -- | -1.02 | -- | 12.46 | 7 | -- | -- |
| 429.43 | 0.967 | 8.25 | -- | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.26 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 2 | 236.90 | radiation | 30.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 5 | 237.48 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 10 | 239.23 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 12 | 239.33 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 15 | 239.96 | radiation | 10.0 | 10 | > th | dose independent | sin | 5 | NA |
| 27 | 241.80 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 39 | 242.96 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 40 | 242.99 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 41 | 243.22 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 42 | 243.39 | radiation | 10.0 | 10 | > th | dose independent | rect. | 6 | 8 |
| 56 | 243.51 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 82 | 244.57 | radiation | 10.0 | 10 | < th | dose independent | sin | 6 | NA |
| 122 | 245.26 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 146 | 245.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 17 |
| 148 | 245.81 | radiation | 1.0 | 30 | > th | dose dependent | sin | 6 | NA |
| 149 | 245.82 | wind | 7.0 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 151 | 245.83 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 13 | 18 |
| 154 | 245.87 | radiation | 10.0 | 10 | < th | dose independent | rect. | 2 | 17 |
| 169 | 246.24 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 206 | 246.64 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 218 | 246.75 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 237 | 246.96 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 8 |
| 254 | 247.27 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 269 | 247.45 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 278 | 247.63 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 280 | 247.66 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 290 | 247.81 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 292 | 247.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 296 | 247.86 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 8 |
| 301 | 247.93 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 18 |
| 329 | 248.14 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 365 | 248.35 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 369 | 248.41 | radiation | 1.0 | 270 | < th | dose independent | sin | 8 | NA |
| 370 | 248.41 | wind | 5.0 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 372 | 248.44 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 390 | 248.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 395 | 248.57 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 405 | 248.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 420 | 248.83 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 21 |
| 421 | 248.83 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 20 | 23 |
| 425 | 248.86 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 5 |
| 434 | 248.96 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 450 | 249.06 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 460 | 249.12 | wind | 7.0 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 483 | 249.22 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 504 | 249.30 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 13 |
| 509 | 249.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 510 | 249.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 515 | 249.37 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 560 | 249.79 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 564 | 249.81 | wind | 5.0 | 90 | < th | dose independent | rect. | 7 | 6 |
| 579 | 249.91 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 604 | 250.04 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 606 | 250.05 | radiation | 10.0 | 10 | < th | dose independent | rect. | 1 | 21 |
| 610 | 250.07 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 620 | 250.12 | wind | 5.0 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 646 | 250.24 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 13 | 18 |
| 650 | 250.25 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 670 | 250.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 15 |
| 671 | 250.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 687 | 250.37 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 3 | 11 |
| 710 | 250.47 | radiation | 10.0 | 10 | < th | dose independent | rect. | 20 | 23 |
| 717 | 250.50 | radiation | 20.0 | 10 | < th | dose independent | rect. | 9 | 23 |
| 719 | 250.50 | wind | 9.0 | 10 | < th | dose dependent | rect. | 7 | 6 |
| 721 | 250.51 | temperature | 20.0 | 90 | > th | dose independent | rect. | 6 | 7 |
| 728 | 250.54 | radiation | 20.0 | 10 | < th | dose independent | rect. | 12 | 20 |
| 739 | 250.59 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 12 | 19 |
| 744 | 250.62 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 767 | 250.71 | radiation | 10.0 | 10 | < th | dose independent | rect. | 2 | 12 |
| 780 | 250.77 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 15 |
| 788 | 250.81 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 794 | 250.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 796 | 250.82 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 800 | 250.84 | wind | 3.0 | 270 | < th | dose independent | rect. | 7 | 2 |
| 822 | 250.95 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 830 | 250.97 | wind | 1.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 833 | 250.98 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 835 | 250.99 | radiation | 10.0 | 10 | < th | dose independent | rect. | 2 | 8 |
| 863 | 251.10 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 864 | 251.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 17 |
| 866 | 251.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 898 | 251.26 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 10 |
| 920 | 251.35 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 923 | 251.36 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 964 | 251.44 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 15 |
| 969 | 251.45 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 14 |
| 980 | 251.48 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 7 |
| 981 | 251.48 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 982 | 251.48 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 9 |
| 984 | 251.48 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 15 |
| 985 | 251.48 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 15 |
| 999 | 251.51 | wind | 1.0 | 14400 | > th | dose independent | rect. | 15 | 18 |