BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0605600 Os01g0605600|J065022D17
         (429 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0605600  Conserved hypothetical protein                      889   0.0  

>Os01g0605600 Conserved hypothetical protein
          Length = 429

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/429 (100%), Positives = 429/429 (100%)

Query: 1   QALKIISLCGWEPRLLPYAVDCGTKSHSDANSSSTLTQPGLINNSMEDRVVVYAPNEVDG 60
           QALKIISLCGWEPRLLPYAVDCGTKSHSDANSSSTLTQPGLINNSMEDRVVVYAPNEVDG
Sbjct: 1   QALKIISLCGWEPRLLPYAVDCGTKSHSDANSSSTLTQPGLINNSMEDRVVVYAPNEVDG 60

Query: 61  STVIADARQAYQHYDPLSVVLDCQFCGACVALWPFSLVERPLQLFKLISDSSRQDEQTEG 120
           STVIADARQAYQHYDPLSVVLDCQFCGACVALWPFSLVERPLQLFKLISDSSRQDEQTEG
Sbjct: 61  STVIADARQAYQHYDPLSVVLDCQFCGACVALWPFSLVERPLQLFKLISDSSRQDEQTEG 120

Query: 121 HAGRVSGAGPSKTANIGFNFTIAGGPPPTRQNFRPRVSLPVVSRHLKADLSSHGHFISSG 180
           HAGRVSGAGPSKTANIGFNFTIAGGPPPTRQNFRPRVSLPVVSRHLKADLSSHGHFISSG
Sbjct: 121 HAGRVSGAGPSKTANIGFNFTIAGGPPPTRQNFRPRVSLPVVSRHLKADLSSHGHFISSG 180

Query: 181 SDNHMVPVTLHASGLTKHKRSMDESHMLEGNNTISTDAGTTTNGADHQRENSVNGTSNLV 240
           SDNHMVPVTLHASGLTKHKRSMDESHMLEGNNTISTDAGTTTNGADHQRENSVNGTSNLV
Sbjct: 181 SDNHMVPVTLHASGLTKHKRSMDESHMLEGNNTISTDAGTTTNGADHQRENSVNGTSNLV 240

Query: 241 ANPEHQQGGSHSDTSRVTSTGEVSNEESETGHAAIKSHTSTDELGQHGSDPKSLPVEDSS 300
           ANPEHQQGGSHSDTSRVTSTGEVSNEESETGHAAIKSHTSTDELGQHGSDPKSLPVEDSS
Sbjct: 241 ANPEHQQGGSHSDTSRVTSTGEVSNEESETGHAAIKSHTSTDELGQHGSDPKSLPVEDSS 300

Query: 301 NAHDLAKTCTNNSRPVQAATLTKSSNDGEKGASQPSGSQGLYDKLNEFDPMKQHRTFCPW 360
           NAHDLAKTCTNNSRPVQAATLTKSSNDGEKGASQPSGSQGLYDKLNEFDPMKQHRTFCPW
Sbjct: 301 NAHDLAKTCTNNSRPVQAATLTKSSNDGEKGASQPSGSQGLYDKLNEFDPMKQHRTFCPW 360

Query: 361 ICPDGGETLPGWRLTLPALLSQDKRIDEDSQVEPQISLLSEEDDPVTSVRKLFMTPPSKK 420
           ICPDGGETLPGWRLTLPALLSQDKRIDEDSQVEPQISLLSEEDDPVTSVRKLFMTPPSKK
Sbjct: 361 ICPDGGETLPGWRLTLPALLSQDKRIDEDSQVEPQISLLSEEDDPVTSVRKLFMTPPSKK 420

Query: 421 LRIHRAEKG 429
           LRIHRAEKG
Sbjct: 421 LRIHRAEKG 429



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.128    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,352,679
Number of extensions: 729347
Number of successful extensions: 1794
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 325
Effective length of database: 11,605,545
Effective search space: 3771802125
Effective search space used: 3771802125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)