BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0604000 Os01g0604000|AK067145
         (226 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0604000  Conserved hypothetical protein                      183   8e-47

>Os01g0604000 Conserved hypothetical protein
          Length = 226

 Score =  183 bits (465), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 112/207 (54%), Positives = 112/207 (54%)

Query: 20  AVAKGGIAGRGRLPPGEEMGGNDSGRGVGRERPLLPTGSSLXXXXXXXXXXXXXXXXXXX 79
           AVAKGGIAGRGRLPPGEEMGGNDSGRGVGRERPLLPTGSSL                   
Sbjct: 20  AVAKGGIAGRGRLPPGEEMGGNDSGRGVGRERPLLPTGSSLPRRCRRPPRPRWIPPWRSG 79

Query: 80  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPGCGKKWNXXXXXXXXXXXXXXXXXX 139
                                            LPGCGKKWN                  
Sbjct: 80  HRPGRPPRRRSIRPRRPTSATSRRIPPPPPPRHLPGCGKKWNRPPPPPRGPRRGQRPSSI 139

Query: 140 XXXLGPSMPVHEAGVVGLQNAEAXXXXXXXPASVQYSSVQLRNLVVETDDERGGGELVXX 199
              LGPSMPVHEAGVVGLQNAEA       PASVQYSSVQLRNLVVETDDERGGGELV  
Sbjct: 140 SPPLGPSMPVHEAGVVGLQNAEARRRRGGGPASVQYSSVQLRNLVVETDDERGGGELVHR 199

Query: 200 XXXXXXXXXXXXXYLHLRLHTISQLKR 226
                        YLHLRLHTISQLKR
Sbjct: 200 HHHRLPDLPLPNHYLHLRLHTISQLKR 226



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,700,025
Number of extensions: 143520
Number of successful extensions: 456
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 129
Effective length of database: 11,971,043
Effective search space: 1544264547
Effective search space used: 1544264547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)