BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0602800 Os01g0602800|015-011-A08
         (32 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0602800  Similar to Dual-specific kinase DSK1                 68   2e-12

>Os01g0602800 Similar to Dual-specific kinase DSK1
          Length = 32

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  ISGRNKETLQWSARQKIAVGAARGLRYLHEEC 32
          ISGRNKETLQWSARQKIAVGAARGLRYLHEEC
Sbjct: 1  ISGRNKETLQWSARQKIAVGAARGLRYLHEEC 32



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,054,009
Number of extensions: 17392
Number of successful extensions: 909
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 909
Number of HSP's successfully gapped: 1
Length of query: 32
Length of database: 17,035,801
Length adjustment: 7
Effective length of query: 25
Effective length of database: 16,670,303
Effective search space: 416757575
Effective search space used: 416757575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)