BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0599900 Os01g0599900|Os01g0599900
         (537 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0599900  Galactose-binding like domain containing protein    937   0.0  
Os01g0876400  Galactose-binding like domain containing protein    273   3e-73
Os06g0698150                                                      161   9e-40
Os02g0209200                                                       97   3e-20

>Os01g0599900 Galactose-binding like domain containing protein
          Length = 537

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/537 (86%), Positives = 462/537 (86%)

Query: 1   MDGGLREVSLSVVFSVWCLLFLLRSQFLHSQTDPSDFYDDVEDGMRENYCKVMPLEAYIF 60
           MDGGLREVSLSVVFSVWCLLFLLRSQFLHSQTDPSDFYDDVEDGMRENYCKVMPLEAYIF
Sbjct: 1   MDGGLREVSLSVVFSVWCLLFLLRSQFLHSQTDPSDFYDDVEDGMRENYCKVMPLEAYIF 60

Query: 61  PTEYNASAAAPTCQPSLHPPDQPQQETDHRSLEPFNNTTGGKSSXXXXXXXXXXXFRSRI 120
           PTEYNASAAAPTCQPSLHPPDQPQQETDHRSLEPFNNTTGGKSS           FRSRI
Sbjct: 61  PTEYNASAAAPTCQPSLHPPDQPQQETDHRSLEPFNNTTGGKSSAEAAALDELDEFRSRI 120

Query: 121 LQGKAENGRVPDGATPAAHRLEPSGAEYNYAAASKGAKVLAHNREAKGAANILGGDKDRY 180
           LQGKAENGRVPDGATPAAHRLEPSGAEYNYAAASKGAKVLAHNREAKGAANILGGDKDRY
Sbjct: 121 LQGKAENGRVPDGATPAAHRLEPSGAEYNYAAASKGAKVLAHNREAKGAANILGGDKDRY 180

Query: 181 LRNPCSADDKFVDVELSEETLVRTIGLANLEHYSSNFRDFELYGSPSYPAPAEEWELLGR 240
           LRNPCSADDKFVDVELSEETLVRTIGLANLEHYSSNFRDFELYGSPSYPAPAEEWELLGR
Sbjct: 181 LRNPCSADDKFVDVELSEETLVRTIGLANLEHYSSNFRDFELYGSPSYPAPAEEWELLGR 240

Query: 241 FTADNAKHAQRFVLPDPRWTRYLRLRLATHYGSGFYCILSYLEVYGIDAVEQMLQEIIXX 300
           FTADNAKHAQRFVLPDPRWTRYLRLRLATHYGSGFYCILSYLEVYGIDAVEQMLQEII  
Sbjct: 241 FTADNAKHAQRFVLPDPRWTRYLRLRLATHYGSGFYCILSYLEVYGIDAVEQMLQEIISG 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXLRNDTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNG 360
                                LRNDTAQ                            KNNG
Sbjct: 301 SGADTDASAAAKAEEGGDGGTLRNDTAQVNARLDGVGGGGGSAAGRNDSAGDGAGAKNNG 360

Query: 361 SRMTVAGDGKPAAAGRFHGDAVLKIMMQKMRSLELGLSTLEDYTKALNHRYGAKLPDLHT 420
           SRMTVAGDGKPAAAGRFHGDAVLKIMMQKMRSLELGLSTLEDYTKALNHRYGAKLPDLHT
Sbjct: 361 SRMTVAGDGKPAAAGRFHGDAVLKIMMQKMRSLELGLSTLEDYTKALNHRYGAKLPDLHT 420

Query: 421 GLSQTTMALDRMKADVRDLVEWKGNVAKDLGELKEWRSNVEEMRSIQETMQNKELAVLSI 480
           GLSQTTMALDRMKADVRDLVEWKGNVAKDLGELKEWRSNVEEMRSIQETMQNKELAVLSI
Sbjct: 421 GLSQTTMALDRMKADVRDLVEWKGNVAKDLGELKEWRSNVEEMRSIQETMQNKELAVLSI 480

Query: 481 SXXXXXXXXXXXXXDRVLFLFTRKGAAAAERMCGASKGWILVLASSSFTTFLVLLYN 537
           S             DRVLFLFTRKGAAAAERMCGASKGWILVLASSSFTTFLVLLYN
Sbjct: 481 SLFFACLALFKLACDRVLFLFTRKGAAAAERMCGASKGWILVLASSSFTTFLVLLYN 537



>Os01g0876400 Galactose-binding like domain containing protein
          Length = 607

 Score =  273 bits (697), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 163/440 (37%), Positives = 227/440 (51%), Gaps = 34/440 (7%)

Query: 116 FRSRILQGKAENGR-VPDGAT-PAAHRLEPSGAEYNYAAASKGAKVLAHNREAKGAANIL 173
           F++R +   AE G+ VP G      HR EPSG  YNYA+A+KGAKVL  N+EAKGA+NIL
Sbjct: 181 FKTRAI---AERGKGVPSGQPGNVIHRREPSGKLYNYASAAKGAKVLEFNKEAKGASNIL 237

Query: 174 GGDKDRYLRNPCSADDKFVDVELSEETLVRTIGLANLEHYSSNFRDFELYGSPSYPAPAE 233
             DKD+YLRNPCSA+ KFV +ELSEETLV TI +AN EHYSSN ++FE+  S +Y  P +
Sbjct: 238 DKDKDKYLRNPCSAEGKFVIIELSEETLVDTIAIANFEHYSSNLKEFEMLSSLNY--PTD 295

Query: 234 EWELLGRFTADNAKHAQRFVLPDPRWTRYLRLRLATHYGSGFYCILSYLEVYGIDAVEQM 293
            WE LGRFT  NAK AQ F  P+P+W RYL+L L +HYGS FYC LS LEVYG+DAVE+M
Sbjct: 296 SWETLGRFTVANAKIAQNFTFPEPKWARYLKLNLLSHYGSEFYCTLSMLEVYGMDAVEKM 355

Query: 294 LQEIIXXXXXXXXXXXXXXXXXXXXXXXLRNDTAQXXXXXXXXXXXXXXXXXXXXXXXXX 353
           L+ +I                        +    +                         
Sbjct: 356 LENLIPVENKRLEPDDKMKEPVDQ-----QTQLKEPTEGKESSHEPLDEDEFELEDDKLN 410

Query: 354 XXXKNNGSRMTVAGDGKPAAAGRFHGDAVLKIMMQKMRSLELGLSTLEDYTKALNHRYGA 413
                NG+   V  + +P  AGR  GD VLK++MQK++SL++  S LE Y + LN RYG 
Sbjct: 411 GDSSKNGAHDQVT-ETRPIQAGRIPGDTVLKVLMQKVQSLDVSFSVLERYLEELNSRYGQ 469

Query: 414 KLPDLHTGLSQTTMALDRMKADVRDLVEWKGNVAKDLGELKEW----------------- 456
              D    +      L+++K +++ L   K + AK++  +  W                 
Sbjct: 470 IFKDFDADIDTKDALLEKIKLELKHLERSKDDFAKEIEGILSWKLVASSQLNQLLLDNVI 529

Query: 457 -RSNVEEMRSIQETMQNKELAVLSISXXXXXXXXXXXXXDRVLFLFTRKGAAAAERMCGA 515
            RS +E  R  Q  ++N+  AV+ +S               +  +F        E+    
Sbjct: 530 IRSELERFREKQADLENRSFAVIFLSFVFGCLAIAKLS---IGMIFNTCRLYNFEKFDRV 586

Query: 516 SKGWILVLASSSFTTFLVLL 535
             GW+++L SS     ++++
Sbjct: 587 KSGWLVLLFSSCIIASILII 606



>Os06g0698150 
          Length = 248

 Score =  161 bits (408), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 100/167 (59%), Gaps = 47/167 (28%)

Query: 1   MDGGLREVSLSVVFSVWCLLFLLRSQFLHSQTDPS----------DFYDDVEDGMRENYC 50
           MD GLREVSLSVVFSVWCLL LLRSQ   S    S          DFYDDVEDGMRENYC
Sbjct: 1   MDSGLREVSLSVVFSVWCLL-LLRSQCHGSINVMSPWRLIDLFFVDFYDDVEDGMRENYC 59

Query: 51  KVMPLEAYIFPTEYNASAAAPTCQPSLHPPDQPQQETDHRSLEPFNNTTGGKSSXXXXXX 110
           K                                 QETDHRSLEPFNNTTG KSS      
Sbjct: 60  K---------------------------------QETDHRSLEPFNNTTGSKSSTDAALD 86

Query: 111 XXXXXFRSRILQGKAENGRVPDGATPAAHRLEPSGAEYNYAAASKGA 157
                FRSRILQGKA NGR+PDGA  AAHRLEPSGAEYNYAAASKGA
Sbjct: 87  ELDE-FRSRILQGKAANGRIPDGA--AAHRLEPSGAEYNYAAASKGA 130



>Os02g0209200 
          Length = 172

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 53/69 (76%), Gaps = 2/69 (2%)

Query: 116 FRSRILQGKAENGRVPDGATPAAHRLEPSGAEYNYAAASKGAKVLAHNREAKGAANILGG 175
            R    +GKAENG VPDGA  AAHRLEPSG EYNYAAASKG+KVLAHNREAKGAANILG 
Sbjct: 48  MRENYCKGKAENGCVPDGA--AAHRLEPSGGEYNYAAASKGSKVLAHNREAKGAANILGA 105

Query: 176 DKDRYLRNP 184
              RY   P
Sbjct: 106 TLLRYHTAP 114




 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/54 (90%), Positives = 49/54 (90%), Gaps = 3/54 (5%)

Query: 1  MDGGLREVSLSVVFSVWCLLFLLR---SQFLHSQTDPSDFYDDVEDGMRENYCK 51
          MDGGLREVSLSVVFSVWCLL LL    SQFLHSQTDPSDFYDDVEDGMRENYCK
Sbjct: 1  MDGGLREVSLSVVFSVWCLLLLLLLLCSQFLHSQTDPSDFYDDVEDGMRENYCK 54



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,740,887
Number of extensions: 680216
Number of successful extensions: 1764
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1757
Number of HSP's successfully gapped: 7
Length of query: 537
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 431
Effective length of database: 11,501,117
Effective search space: 4956981427
Effective search space used: 4956981427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)