BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0594700 Os01g0594700|Os01g0594700
         (379 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0594700  FAD dependent oxidoreductase family protein         706   0.0  
Os07g0155100  FAD dependent oxidoreductase family protein         280   8e-76

>Os01g0594700 FAD dependent oxidoreductase family protein
          Length = 379

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/379 (94%), Positives = 357/379 (94%)

Query: 1   MLPRMREYGWEDGARQAASIYASQTDRGSIAISIRIFPYKLPHGTPVSTHPDLAAAASPA 60
           MLPRMREYGWEDGARQAASIYASQTDRGSIAISIRIFPYKLPHGTPVSTHPDLAAAASPA
Sbjct: 1   MLPRMREYGWEDGARQAASIYASQTDRGSIAISIRIFPYKLPHGTPVSTHPDLAAAASPA 60

Query: 61  PHPKLSHWVDPAASAAPPRELATADTTAQVHPGSFTKAVLAASDAXXXXXXXXXXXXXXX 120
           PHPKLSHWVDPAASAAPPRELATADTTAQVHPGSFTKAVLAASDA               
Sbjct: 61  PHPKLSHWVDPAASAAPPRELATADTTAQVHPGSFTKAVLAASDAEVVIGEVKRVVVRDG 120

Query: 121 XXXXXXXKGRGVVDADAVVFALGPWSGGEVYICGITKDEEVPNDPATITGDPDSIAALHE 180
                  KGRGVVDADAVVFALGPWSGGEVYICGITKDEEVPNDPATITGDPDSIAALHE
Sbjct: 121 RVIGVEVKGRGVVDADAVVFALGPWSGGEVYICGITKDEEVPNDPATITGDPDSIAALHE 180

Query: 181 IAGRVSSQLKREEGAEVVAEQACYMPCTSDGLPVIGEMPGVKGCYVATGHGGWGILNAPA 240
           IAGRVSSQLKREEGAEVVAEQACYMPCTSDGLPVIGEMPGVKGCYVATGHGGWGILNAPA
Sbjct: 181 IAGRVSSQLKREEGAEVVAEQACYMPCTSDGLPVIGEMPGVKGCYVATGHGGWGILNAPA 240

Query: 241 TGAALAELILNGSASIFDLSPFSPARFLNKRTRFSLTSAKLPDAMFCLNVNRLEQEDAIL 300
           TGAALAELILNGSASIFDLSPFSPARFLNKRTRFSLTSAKLPDAMFCLNVNRLEQEDAIL
Sbjct: 241 TGAALAELILNGSASIFDLSPFSPARFLNKRTRFSLTSAKLPDAMFCLNVNRLEQEDAIL 300

Query: 301 PQDLLQDKVVAFNKMQLIRNVSKKFDWVTCLDIQVQGYFALFDYLIQFLLVEFIETLDFL 360
           PQDLLQDKVVAFNKMQLIRNVSKKFDWVTCLDIQVQGYFALFDYLIQFLLVEFIETLDFL
Sbjct: 301 PQDLLQDKVVAFNKMQLIRNVSKKFDWVTCLDIQVQGYFALFDYLIQFLLVEFIETLDFL 360

Query: 361 NIRAAISVKEKRKMHRIFI 379
           NIRAAISVKEKRKMHRIFI
Sbjct: 361 NIRAAISVKEKRKMHRIFI 379



>Os07g0155100 FAD dependent oxidoreductase family protein
          Length = 391

 Score =  280 bits (717), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 155/262 (59%), Positives = 166/262 (63%), Gaps = 56/262 (21%)

Query: 68  WVDPAASAAPPRELATADTTAQVHPGSFTKAVLAASDAXXXXXXXXXXXXXXXXXXXXXX 127
           WVDPAASAAPPREL T DTTAQVHPG FTKAVLAAS A                      
Sbjct: 127 WVDPAASAAPPRELGTTDTTAQVHPGFFTKAVLAASGAEVVIGEAERVVVRDGRVAGVVV 186

Query: 128 KGRGVVDADAVVFALGPWSGG--------------------------------------- 148
           +GRG VDADAVV AL PWSG                                        
Sbjct: 187 RGRGEVDADAVVLALVPWSGRFEMVREVFDVSGLKAHSIVLRPREPENITPHALFLSYQP 246

Query: 149 ---------EVY--------ICGITKDEEVPNDPATITGDPDSIAALHEIAGRVSSQLKR 191
                    EVY        ICG+TKDEEVP+DP TITG+PDSIA LH+IAGRVS QLKR
Sbjct: 247 EPGAKMLDPEVYPRPTGEVYICGMTKDEEVPDDPETITGEPDSIAMLHKIAGRVSGQLKR 306

Query: 192 EEGAEVVAEQACYMPCTSDGLPVIGEMPGVKGCYVATGHGGWGILNAPATGAALAELILN 251
           EEGAEVVAEQACY+PCT DGLPVIGEMPGVKGCYVATGH  WGILNAPATGAALAELIL+
Sbjct: 307 EEGAEVVAEQACYLPCTDDGLPVIGEMPGVKGCYVATGHSCWGILNAPATGAALAELILD 366

Query: 252 GSASIFDLSPFSPARFLNKRTR 273
           G A I DL+PFSPARFL K+++
Sbjct: 367 GDAKIVDLAPFSPARFLKKKSK 388



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,755,993
Number of extensions: 550679
Number of successful extensions: 2381
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2379
Number of HSP's successfully gapped: 3
Length of query: 379
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 276
Effective length of database: 11,657,759
Effective search space: 3217541484
Effective search space used: 3217541484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)