BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0589700 Os01g0589700|J090048E23
         (231 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0589700  Conserved hypothetical protein                      348   3e-96
Os05g0591450                                                       69   3e-12

>Os01g0589700 Conserved hypothetical protein
          Length = 231

 Score =  348 bits (892), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 176/231 (76%), Positives = 176/231 (76%)

Query: 1   AVKMLLAVEXXXXXXXXXXXXXXXXXXXXXXRKDEEKPVKVSPWNQYRLVDREAEQVYHL 60
           AVKMLLAVE                      RKDEEKPVKVSPWNQYRLVDREAEQVYHL
Sbjct: 1   AVKMLLAVEGGGFFSSSASGYSHGLALLLLGRKDEEKPVKVSPWNQYRLVDREAEQVYHL 60

Query: 61  ASRKDQAPGKCAPFICFGRAAAGLEGASPPKLXXXXXXXXXXXXXXXXXXXXXXGSLTGN 120
           ASRKDQAPGKCAPFICFGRAAAGLEGASPPKL                      GSLTGN
Sbjct: 61  ASRKDQAPGKCAPFICFGRAAAGLEGASPPKLSSGNTSGSSSEESSASANEGTNGSLTGN 120

Query: 121 EKKGCLKSNSRRDSLEHCIVVSXXXXXXXXXXXVQTLKSGMERRKVQWTDTCGKELFEIR 180
           EKKGCLKSNSRRDSLEHCIVVS           VQTLKSGMERRKVQWTDTCGKELFEIR
Sbjct: 121 EKKGCLKSNSRRDSLEHCIVVSEGEEPRESLEEVQTLKSGMERRKVQWTDTCGKELFEIR 180

Query: 181 EFEARYSMKILSPSPYVRCICRKFIEFMICTHLFFCSAEEHDLHSLIHTSD 231
           EFEARYSMKILSPSPYVRCICRKFIEFMICTHLFFCSAEEHDLHSLIHTSD
Sbjct: 181 EFEARYSMKILSPSPYVRCICRKFIEFMICTHLFFCSAEEHDLHSLIHTSD 231



>Os05g0591450 
          Length = 169

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 4   MLLAVEXXXXXXXXXXXXXXXXXXXXXXRKDEEKPVKVSPWNQYRLVDR-EAEQVYHLAS 62
           MLLAVE                       K EEKPVKV+PWN YRLV   EAE     AS
Sbjct: 69  MLLAVEVGGFFSSSASGYRNGLALLLLGHKGEEKPVKVTPWNHYRLVGGGEAEP----AS 124

Query: 63  RKDQAP-GKCAPFICFGRAAAGLEGASPPKL 92
            ++  P GKCA FICFG   A L+G SPPKL
Sbjct: 125 EENNVPSGKCASFICFGCPPARLKGVSPPKL 155



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,048,385
Number of extensions: 191662
Number of successful extensions: 253
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 133
Effective length of database: 11,918,829
Effective search space: 1585204257
Effective search space used: 1585204257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)