BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0580100 Os01g0580100|AK103451
(553 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0580100 Alg9-like mannosyltransferase family protein 976 0.0
>Os01g0580100 Alg9-like mannosyltransferase family protein
Length = 553
Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/508 (94%), Positives = 478/508 (94%)
Query: 33 RPDLPWAWALGSEXXXXXXXXXXXXXXXXXXXTYFNPDEHWQCLEVAHRIVFGYGHLTWE 92
RPDLPWAWALGSE TYFNPDEHWQCLEVAHRIVFGYGHLTWE
Sbjct: 33 RPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQCLEVAHRIVFGYGHLTWE 92
Query: 93 WKRGLRSYLHPFIFAALYKILSLLHLDSPWFMAMAPRLLQSVFASFGDLYLYKLSKLIFN 152
WKRGLRSYLHPFIFAALYKILSLLHLDSPWFMAMAPRLLQSVFASFGDLYLYKLSKLIFN
Sbjct: 93 WKRGLRSYLHPFIFAALYKILSLLHLDSPWFMAMAPRLLQSVFASFGDLYLYKLSKLIFN 152
Query: 153 NHVAQWALFSQLVNWFMFFCITRTLSNSMETVLTVTGLYYWFVAIESVKGNSVVSKQQAA 212
NHVAQWALFSQLVNWFMFFCITRTLSNSMETVLTVTGLYYWFVAIESVKGNSVVSKQQAA
Sbjct: 153 NHVAQWALFSQLVNWFMFFCITRTLSNSMETVLTVTGLYYWFVAIESVKGNSVVSKQQAA 212
Query: 213 SKQSPPSRKMXXXXXXXXXXXRPTSAITWLYVGLLDFIQMKSKSRFIFLEVVPLGVFVLA 272
SKQSPPSRKM RPTSAITWLYVGLLDFIQMKSKSRFIFLEVVPLGVFVLA
Sbjct: 213 SKQSPPSRKMALLIAALACAIRPTSAITWLYVGLLDFIQMKSKSRFIFLEVVPLGVFVLA 272
Query: 273 VTTFLDCWMYGSRIIVPLNFLKFNLFSSGGDYYGTHVFHWYFSQGFPSMIWTFLPFSISG 332
VTTFLDCWMYGSRIIVPLNFLKFNLFSSGGDYYGTHVFHWYFSQGFPSMIWTFLPFSISG
Sbjct: 273 VTTFLDCWMYGSRIIVPLNFLKFNLFSSGGDYYGTHVFHWYFSQGFPSMIWTFLPFSISG 332
Query: 333 ILKSREWRLAGLIVWVLVVYSILGHKEFRFVLPVLPFMFMFSGHNLAAMAQLKGKGHNEK 392
ILKSREWRLAGLIVWVLVVYSILGHKEFRFVLPVLPFMFMFSGHNLAAMAQLKGKGHNEK
Sbjct: 333 ILKSREWRLAGLIVWVLVVYSILGHKEFRFVLPVLPFMFMFSGHNLAAMAQLKGKGHNEK 392
Query: 393 GRLSRLKLSVILLILTNVPMALYMSLYHQRGTEDAMLYLSREAHDGRVKSVLFLMPCHST 452
GRLSRLKLSVILLILTNVPMALYMSLYHQRGTEDAMLYLSREAHDGRVKSVLFLMPCHST
Sbjct: 393 GRLSRLKLSVILLILTNVPMALYMSLYHQRGTEDAMLYLSREAHDGRVKSVLFLMPCHST 452
Query: 453 PYYSTLHYNLPMRFLDCTPSENKGTLDESDRFLMNPADFVGEVFGNLSSFSHIVLFESEE 512
PYYSTLHYNLPMRFLDCTPSENKGTLDESDRFLMNPADFVGEVFGNLSSFSHIVLFESEE
Sbjct: 453 PYYSTLHYNLPMRFLDCTPSENKGTLDESDRFLMNPADFVGEVFGNLSSFSHIVLFESEE 512
Query: 513 RHVKLLLRNSFQEVRRFFHSHFKVDRDL 540
RHVKLLLRNSFQEVRRFFHSHFKVDRDL
Sbjct: 513 RHVKLLLRNSFQEVRRFFHSHFKVDRDL 540
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.140 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,985,250
Number of extensions: 619668
Number of successful extensions: 1231
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1233
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 447
Effective length of database: 11,501,117
Effective search space: 5140999299
Effective search space used: 5140999299
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 159 (65.9 bits)