BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0567400 Os01g0567400|Os01g0567400
         (149 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0567400  Conserved hypothetical protein                      136   6e-33
Os03g0302500  Conserved hypothetical protein                       63   9e-11

>Os01g0567400 Conserved hypothetical protein
          Length = 149

 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/149 (51%), Positives = 76/149 (51%)

Query: 1   MDRSKSYAGGRTTMQIEPYYXXXXXXXXXRPVDFXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDRSKSYAGGRTTMQIEPYY         RPVDF                          
Sbjct: 1   MDRSKSYAGGRTTMQIEPYYGGGGGGGGGRPVDFRSYSYSGGGGGGRGGAGASSYQYQYE 60

Query: 61  XXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXWLALGDPDMERKRRVASYKAY 120
                         V                        WLALGDPDMERKRRVASYKAY
Sbjct: 61  YGGGGSGKVGYWGSVAEEERGTGQAAAEAAAKRSKSKRRWLALGDPDMERKRRVASYKAY 120

Query: 121 SVEGKVKGSFRKSFKWIKDRYLHLVYGWS 149
           SVEGKVKGSFRKSFKWIKDRYLHLVYGWS
Sbjct: 121 SVEGKVKGSFRKSFKWIKDRYLHLVYGWS 149



>Os03g0302500 Conserved hypothetical protein
          Length = 120

 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 102 ALGDPDMERKRRVASYKAYSVEGKVKGSFRKSFKWIKDRYLHLVYG 147
              DP+M+R+RRVASYKAYSVEGKVK S R+ F+WIK +   L++G
Sbjct: 75  CFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG 120



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,647,546
Number of extensions: 61242
Number of successful extensions: 114
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)