BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0565600 Os01g0565600|AK061216
         (176 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0565600  Protein of unknown function DUF866, eukaryotic...   365   e-102
Os06g0688900                                                       67   7e-12

>Os01g0565600 Protein of unknown function DUF866, eukaryotic family protein
          Length = 176

 Score =  365 bits (937), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MVYYALYWWADLDNLTNLQPRYGCDDPTYPYYFKLRCENCGEVSAKATCVSLGEVVDLPN 60
           MVYYALYWWADLDNLTNLQPRYGCDDPTYPYYFKLRCENCGEVSAKATCVSLGEVVDLPN
Sbjct: 1   MVYYALYWWADLDNLTNLQPRYGCDDPTYPYYFKLRCENCGEVSAKATCVSLGEVVDLPN 60

Query: 61  GRSTANLVQKCKLCGRDASIVMIPGQGTPLTMEQSQKGDRTCLMVFDCRGCEPIDFAFGN 120
           GRSTANLVQKCKLCGRDASIVMIPGQGTPLTMEQSQKGDRTCLMVFDCRGCEPIDFAFGN
Sbjct: 61  GRSTANLVQKCKLCGRDASIVMIPGQGTPLTMEQSQKGDRTCLMVFDCRGCEPIDFAFGN 120

Query: 121 GWKAESLEGTSFDIDCSEGEFADYDEKGECPVGVGKLRSEFRVVKKQESRGKTKYV 176
           GWKAESLEGTSFDIDCSEGEFADYDEKGECPVGVGKLRSEFRVVKKQESRGKTKYV
Sbjct: 121 GWKAESLEGTSFDIDCSEGEFADYDEKGECPVGVGKLRSEFRVVKKQESRGKTKYV 176



>Os06g0688900 
          Length = 181

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 20/153 (13%)

Query: 23  GCDDPTYPYYFKLRCENCGEVSAKATCVSLG--EVVDLPNGR-------------STANL 67
           G + P   YY KL C+ CGE + +  C+  G     +LP  +             S   +
Sbjct: 15  GFNGPAAAYYLKLSCDTCGEPTTRDVCLVPGPDSCTNLPGIKNQWRYTCYPTCPDSGHVV 74

Query: 68  VQKCKLCGRDASIVMIPGQGTPLTMEQSQKGDRTCLMVFDCRGCEPIDFAFGNGWKAESL 127
           V+KCK+C    S+ ++PG G  LT        RT +M+   +G  P +FA G+ W A  +
Sbjct: 75  VRKCKVCSALGSVALLPGHGKALTTS-----SRTMVMMLQSKGYTPTNFAPGSRWVATKV 129

Query: 128 EGTSFDIDCSEGEFADYDEKGECPVGVGKLRSE 160
            G   +++ +   F  YD     P    K   E
Sbjct: 130 TGYRCELELTADHFKGYDGTITIPSTSTKFSVE 162



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,552,827
Number of extensions: 273435
Number of successful extensions: 542
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 82
Effective length of database: 12,127,685
Effective search space: 994470170
Effective search space used: 994470170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)