BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0551000 Os01g0551000|AK071219
         (291 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0551000  Conserved hypothetical protein                      405   e-113

>Os01g0551000 Conserved hypothetical protein
          Length = 291

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/259 (81%), Positives = 211/259 (81%)

Query: 33  WSRTSKVLDVDAASPTAAPSLGSSVGVPFLWEEAPGRPKXXXXXXXXXXXXXXXXXXXXX 92
           WSRTSKVLDVDAASPTAAPSLGSSVGVPFLWEEAPGRPK                     
Sbjct: 33  WSRTSKVLDVDAASPTAAPSLGSSVGVPFLWEEAPGRPKVVVVAPEHFAPPPPLAPAADE 92

Query: 93  XXXVSHGGEAAPASGGDRGDGDKARHVVVPLKLPPRLQXXXXXXXXXDSSLSPNTVLHGP 152
              VSHGGEAAPASGGDRGDGDKARHVVVPLKLPPRLQ         DSSLSPNTVLHGP
Sbjct: 93  RAPVSHGGEAAPASGGDRGDGDKARHVVVPLKLPPRLQAAAAAAAAADSSLSPNTVLHGP 152

Query: 153 YGGNKPPRPLTRSGSTASHRRKPSAVGVSLWRKATAAARGKKHDYDAAALDASCRSPAXX 212
           YGGNKPPRPLTRSGSTASHRRKPSAVGVSLWRKATAAARGKKHDYDAAALDASCRSPA  
Sbjct: 153 YGGNKPPRPLTRSGSTASHRRKPSAVGVSLWRKATAAARGKKHDYDAAALDASCRSPASS 212

Query: 213 XXXXXXXXXXXXXYFADDDHRRKADGHGDPEPEADGEECGAKSTVRITRFKRNKSLPSVN 272
                        YFADDDHRRKADGHGDPEPEADGEECGAKSTVRITRFKRNKSLPSVN
Sbjct: 213 SSSSSSSSSSSMSYFADDDHRRKADGHGDPEPEADGEECGAKSTVRITRFKRNKSLPSVN 272

Query: 273 TSHLWASIRRSVKQITPWS 291
           TSHLWASIRRSVKQITPWS
Sbjct: 273 TSHLWASIRRSVKQITPWS 291



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,995,181
Number of extensions: 430574
Number of successful extensions: 1236
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 191
Effective length of database: 11,814,401
Effective search space: 2256550591
Effective search space used: 2256550591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)