BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0532100 Os01g0532100|AK106738
(494 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0532100 Tetratricopeptide region domain containing pro... 576 e-164
Os01g0528600 192 5e-49
Os09g0261700 83 6e-16
Os09g0261800 72 1e-12
>Os01g0532100 Tetratricopeptide region domain containing protein
Length = 494
Score = 576 bits (1485), Expect = e-164, Method: Compositional matrix adjust.
Identities = 308/473 (65%), Positives = 308/473 (65%)
Query: 22 KLSGISVRVSHPPQDGAATTTRGHLGLVRAHPGLRDLNAALAGSSSGRDXXXXXXXXXXX 81
KLSGISVRVSHPPQDGAATTTRGHLGLVRAHPGLRDLNAALAGSSSGRD
Sbjct: 22 KLSGISVRVSHPPQDGAATTTRGHLGLVRAHPGLRDLNAALAGSSSGRDALFLDAAHALA 81
Query: 82 XXXXXXPTFTGRYLREYAKKLAAAESTVVYRVEMGLALVHARDGRFDQALADVARLVADR 141
PTFTGRYLREYAKKLAAAESTVVYRVEMGLALVHARDGRFDQALADVARLVADR
Sbjct: 82 AGALRAPTFTGRYLREYAKKLAAAESTVVYRVEMGLALVHARDGRFDQALADVARLVADR 141
Query: 142 PGDPHLRITSAALRLLHGRMGTPAEWLNGLPEDAGWRVAFEVVFAMPGSSPLYTQGAADR 201
PGDPHLRITSAALRLLHGRMGTPAEWLNGLPEDAGWRVAFEVVFAMPGSSPLYTQGAADR
Sbjct: 142 PGDPHLRITSAALRLLHGRMGTPAEWLNGLPEDAGWRVAFEVVFAMPGSSPLYTQGAADR 201
Query: 202 XXXXXXXXXXXXXXXKNFEQGEWSVADKXXXXXXXXXXXXFVSKYSRFPYFTRXXXXXXX 261
KNFEQGEWSVADK FVSKYSRFPYFTR
Sbjct: 202 VVMLLAAKLAEAVLVKNFEQGEWSVADKLAISLLLTALRLFVSKYSRFPYFTRPKSTPPP 261
Query: 262 XXXGGREIKPVNLQPVFLVECSQAMLASLLRARPLCGXXXXXXXXXXXXXXXXXXXXXXX 321
GGREIKPVNLQPVFLVECSQAMLASLLRARPLCG
Sbjct: 262 PSSGGREIKPVNLQPVFLVECSQAMLASLLRARPLCGERLREARATAERALADAEAEGDD 321
Query: 322 XXXXXXXXXXXXXXXRDGDFDDALRRYKAAVQKDPSDSQPYELAAALCAINGDAAESEAW 381
RDGDFDDALRRYKAAVQKDPSDSQPYELAAALCAINGDAAESEAW
Sbjct: 322 LAAVDVNLLLAFLAARDGDFDDALRRYKAAVQKDPSDSQPYELAAALCAINGDAAESEAW 381
Query: 382 RRDGKQHGRXXXXXXXXXXXXXXXXXXXXXXXXXGSGILTTLDLEXXXXXXXXXXXXWRE 441
RRDGKQHGR GSGILTTLDLE WRE
Sbjct: 382 RRDGKQHGRATVAVAVAELELPALLDELVVAAALGSGILTTLDLERGGRRRLVLVAAWRE 441
Query: 442 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTASHGLMKNSTRESD 494
V DTASHGLMKNSTRESD
Sbjct: 442 VDARLAAAVLDDDLTLPERVQLRLLRRLLRGETQLLLDTASHGLMKNSTRESD 494
>Os01g0528600
Length = 612
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 180/392 (45%), Gaps = 37/392 (9%)
Query: 24 SGISVRVSHP-PQDGAATTTR-GHLGLVRAHPGLRDLNAALAGSSSGRDXXXXX----XX 77
G+SVR+S P P GA TR GHLGLVRAHPGLRDLNAAL +++
Sbjct: 122 CGVSVRLSRPSPHRGADDATRCGHLGLVRAHPGLRDLNAALTTTTTSGGSADASFFLDAA 181
Query: 78 XXXXXXXXXXPTFTGRYLR-----EYAKKLAAAEST----VVYRVEMGLALVHARDGRFD 128
PT TG +R KKLAAAES + + LA +HAR+GR D
Sbjct: 182 HALAASALRVPTITGGAIRLMVSDRIPKKLAAAESKGDSKAAVHLRLELATLHAREGRLD 241
Query: 129 QALADVARLVADRPGDPHLRITSAALRLLHGRMGTPAEWLNGLPEDA-----GWRVAFEV 183
+ALA +L D PGD R+ +AAL LHGR GT EWL +PE A R V
Sbjct: 242 EALAAAVQLARDNPGDIRPRLAAAALCCLHGRSGTAFEWLKSVPESARRFKTSDRFVTIV 301
Query: 184 VFAMPGSSPLYTQGAADRXXXXXXXXXXXXXXXKNFEQGEWSVADKXXXXXXXXXXXXFV 243
V+AMPGSSP + D E+GEWS ++ FV
Sbjct: 302 VYAMPGSSPQRVEEGVDGMVVDVAAAIAEDTLSMKLEEGEWSTLERLELAVLGRLLRRFV 361
Query: 244 SK------YSRFPYFTRXXXXXXXXXXGGREIKPVNLQPVFLVECSQAMLASLLRARPLC 297
SK Y F +T ++ LV CSQAMLA +L ARPLC
Sbjct: 362 SKRFAAAAYPEFKSWTWTRPPPPPINATESQLNKA------LVLCSQAMLAPVLGARPLC 415
Query: 298 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGDFDDALRRYKAAVQKDPS 357
G RDG FD+A++RY+AAV +DPS
Sbjct: 416 G----ERLREVRAVADAEAEADASAAVVDVNLLLAFLAIRDGRFDEAMQRYRAAVARDPS 471
Query: 358 DSQPYELAAALCAINGDAAES-EAWRRDGKQH 388
D + YELAAALC+I G AAE +AW R ++H
Sbjct: 472 DRRAYELAAALCSIAGHAAEERDAWLRGEERH 503
>Os09g0261700
Length = 178
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 59/131 (45%), Gaps = 26/131 (19%)
Query: 120 VHARDGRFDQALADVARLVADRPGDPHLRITSAALRLLHGRMGTPAEWLNGLPEDA-GWR 178
VH R GR AR PGDP RIT A L LHGR GT EWLN LP+DA GWR
Sbjct: 55 VHGRFGR--------ARSSWHSPGDPDPRITGAELCFLHGRNGTATEWLNSLPKDADGWR 106
Query: 179 VAFEVVFAMPGSSPLYTQGAADRXXXXXXXXXXXXXXXKNFEQGEWSVADKXXXXXXXXX 238
+AFEVV M ++ NFE+G W V DK
Sbjct: 107 LAFEVVMVMIVATKF-----------------AEAVLVMNFEEGVWPVMDKLAISLLLTV 149
Query: 239 XXXFVSKYSRF 249
FVSKY RF
Sbjct: 150 LRRFVSKYCRF 160
>Os09g0261800
Length = 154
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 41/82 (50%)
Query: 286 MLASLLRARPLCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGDFDDAL 345
MLASLLRARPLCG RDGD DDAL
Sbjct: 1 MLASLLRARPLCGERLREARATAEHALADAKAEGDDLAAVDVNLVLTFLAARDGDLDDAL 60
Query: 346 RRYKAAVQKDPSDSQPYELAAA 367
RRYKAAVQKDPSDS+PYEL A
Sbjct: 61 RRYKAAVQKDPSDSRPYELVVA 82
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,883,234
Number of extensions: 349366
Number of successful extensions: 860
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 848
Number of HSP's successfully gapped: 5
Length of query: 494
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 389
Effective length of database: 11,553,331
Effective search space: 4494245759
Effective search space used: 4494245759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)