Os01g0532100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide region domain containing protein.
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Os01g0532100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.49 | 0.565 | 3.31 | -2.19 | 0.25 | 1.47 | 0.581 | -11.5 | 0.0982 | 22.9 | 26.64 | 918 | -- | -- |
| 167.35 | 0.603 | 3.08 | -0.322 | 0.347 | 0.396 | -0.177 | -- | 0.393 | 22.4 | 10.38 | 918 | -- | -- |
| 145.76 | 0.562 | 3.3 | -2.11 | 0.251 | 1.43 | -- | -11 | 0.131 | 22.7 | 26.74 | 917 | -- | -- |
| 166.09 | 0.6 | 3.09 | -0.31 | 0.437 | 0.376 | -- | -- | 0.405 | 21.6 | 16.2 | 1655 | -- | -- |
| 149.11 | 0.569 | 3.3 | -2.18 | -- | 1.57 | -- | -11.1 | 0.103 | -- | 26.55 | 911 | -- | -- |
| 168.82 | 0.609 | 3.08 | -0.187 | 0.447 | -- | -0.0623 | -- | 0.479 | 21.6 | -- | -- | -- | -- |
| 168.83 | 0.608 | 3.08 | -0.185 | 0.447 | -- | -- | -- | 0.479 | 21.6 | -- | -- | -- | -- |
| 175.17 | 0.616 | 3.08 | -0.304 | -- | 0.394 | -- | -- | 0.406 | -- | 23.4 | 2232 | -- | -- |
| 167.56 | 0.603 | 3.07 | -- | 0.38 | 0.288 | -- | -- | 0.476 | 21.2 | 24.6 | 944 | -- | -- |
| 180.63 | 0.628 | 3.07 | -0.181 | -- | -- | -- | -- | 0.478 | -- | -- | -- | -- | -- |
| 169.73 | 0.609 | 3.07 | -- | 0.446 | -- | -- | -- | 0.5 | 21.6 | -- | -- | -- | -- |
| 173.59 | 0.614 | 3.07 | -- | -- | 0.512 | -- | -- | 0.459 | -- | 24.4 | 843 | -- | -- |
| 181.49 | 0.629 | 3.06 | -- | -- | -- | -- | -- | 0.499 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 3 | 141.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 19 | 142.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 24 | 142.49 | temperature | 25 | 720 | > th | dose dependent | sin | 17 | NA |
| 45 | 143.28 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 12 |
| 93 | 145.06 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 11 |
| 105 | 145.32 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 2 |
| 113 | 145.57 | temperature | 25 | 270 | > th | dose dependent | sin | 13 | NA |
| 187 | 147.32 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 189 | 147.32 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 327 | 147.60 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 345 | 147.70 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 350 | 147.73 | humidity | 60 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 382 | 148.08 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 383 | 148.10 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 384 | 148.10 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 392 | 148.18 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 10 |
| 414 | 148.37 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 452 | 148.69 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 471 | 148.70 | temperature | 25 | 270 | > th | dose independent | sin | 15 | NA |
| 494 | 148.76 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 14 |
| 506 | 148.89 | humidity | 60 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 560 | 148.96 | temperature | 25 | 270 | < th | dose independent | sin | 16 | NA |
| 574 | 148.97 | humidity | 60 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 694 | 149.19 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 5 |
| 695 | 149.19 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 13 |
| 702 | 149.23 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 712 | 149.24 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 754 | 149.50 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 14 |
| 835 | 149.77 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 9 |
| 848 | 149.81 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 7 |
| 905 | 150.07 | radiation | 40 | 10 | > th | dose independent | rect. | 14 | 20 |
| 914 | 150.16 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 18 |
| 921 | 150.22 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 940 | 150.22 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 23 |
| 983 | 150.50 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 1 |