BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0519100 Os01g0519100|AK071677
         (336 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0519100  Cyclin-like F-box domain containing protein         429   e-120

>Os01g0519100 Cyclin-like F-box domain containing protein
          Length = 336

 Score =  429 bits (1103), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/336 (70%), Positives = 236/336 (70%)

Query: 1   MAAACAWDALPEHLQERIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPHRLDAFFL 60
           MAAACAWDALPEHLQERI                                TPHRLDAFFL
Sbjct: 1   MAAACAWDALPEHLQERILSLLPLTALLPVAAASRALRRLLRSRAFHALLTPHRLDAFFL 60

Query: 61  LSPRLAFHXXXXXXXXXXXXXXXXXXXXXXHLVTXXXXXXXXXXXXTSYLLAVVLPIPAX 120
           LSPRLAFH                      HLVT            TSYLLAVVLPIPA 
Sbjct: 61  LSPRLAFHPLSRRLLPAPPAASPPVVSSPSHLVTAASLLRLPPLPATSYLLAVVLPIPAS 120

Query: 121 XXXXXXXXREFTLVAVTAGARVRSYTLDSADPSPRWDPRGDLPLPFALLGNAAGDRRQLF 180
                   REFTLVAVTAGARVRSYTLDSADPSPRWDPRGDLPLPFALLGNAAGDRRQLF
Sbjct: 121 SSSSSSCSREFTLVAVTAGARVRSYTLDSADPSPRWDPRGDLPLPFALLGNAAGDRRQLF 180

Query: 181 VLGRGPDAILVFDLATGQWTVLPAAMPLGLTTAHXXXXXXXXXXXXXXXXXXXXXXXXXW 240
           VLGRGPDAILVFDLATGQWTVLPAAMPLGLTTAH                         W
Sbjct: 181 VLGRGPDAILVFDLATGQWTVLPAAMPLGLTTAHLFVFGGRLFLVGGVERFGVVERVLVW 240

Query: 241 RLEGSEAAAEWTEVGAMPEEVFDELVAGRHGSFWHFQAADRMGIVCLYNAVDGRLVMFDA 300
           RLEGSEAAAEWTEVGAMPEEVFDELVAGRHGSFWHFQAADRMGIVCLYNAVDGRLVMFDA
Sbjct: 241 RLEGSEAAAEWTEVGAMPEEVFDELVAGRHGSFWHFQAADRMGIVCLYNAVDGRLVMFDA 300

Query: 301 VDGGWTRLSRVSGLDVEESRRWFGHVVEPRVELLLG 336
           VDGGWTRLSRVSGLDVEESRRWFGHVVEPRVELLLG
Sbjct: 301 VDGGWTRLSRVSGLDVEESRRWFGHVVEPRVELLLG 336



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,569,563
Number of extensions: 301471
Number of successful extensions: 1026
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1023
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 235
Effective length of database: 11,762,187
Effective search space: 2764113945
Effective search space used: 2764113945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)