Os01g0519100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os01g0519100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.14 | 0.245 | 9.45 | 1.83 | 0.391 | -0.696 | -0.067 | 2.03 | 0.533 | 4.43 | 20.33 | 1412 | -- | -- |
| 30.9 | 0.259 | 9.52 | 1.38 | 0.36 | -0.706 | 0.151 | -- | 0.431 | 3.9 | 16.55 | 7947 | -- | -- |
| 27.14 | 0.243 | 9.45 | 1.84 | 0.381 | -0.694 | -- | 2.03 | 0.535 | 4.48 | 20.56 | 1440 | -- | -- |
| 30.11 | 0.256 | 9.5 | 1.46 | 0.375 | -0.844 | -- | -- | 0.477 | 4.62 | 11 | 8783 | -- | -- |
| 32.52 | 0.266 | 9.44 | 1.98 | -- | -0.783 | -- | 2.51 | 0.581 | -- | 21.68 | 1787 | -- | -- |
| 41.48 | 0.302 | 9.56 | 1 | 0.355 | -- | -0.0203 | -- | 0.225 | 4.7 | -- | -- | -- | -- |
| 41.48 | 0.302 | 9.56 | 1 | 0.355 | -- | -- | -- | 0.225 | 4.69 | -- | -- | -- | -- |
| 33.76 | 0.272 | 9.53 | 1.2 | -- | -0.999 | -- | -- | 0.368 | -- | 11 | 8783 | -- | -- |
| 65.49 | 0.377 | 9.59 | -- | 0.333 | -0.324 | -- | -- | 0.0943 | 3.76 | 27.9 | 826 | -- | -- |
| 48.16 | 0.324 | 9.56 | 1.02 | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
| 68.09 | 0.386 | 9.58 | -- | 0.373 | -- | -- | -- | 0.114 | 4.62 | -- | -- | -- | -- |
| 64.31 | 0.374 | 9.62 | -- | -- | 0.538 | -- | -- | -0.0393 | -- | 2.963 | 47520 | -- | -- |
| 75.51 | 0.406 | 9.59 | -- | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.18 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 2 | 26.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 3 | 26.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 4 | 26.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 12 | 26.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 17 | 26.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 26 | 26.76 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 29 | 26.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 33 | 26.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 112 | 27.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 136 | 27.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 149 | 27.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 161 | 27.18 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 251 | 27.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 342 | 27.45 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 348 | 27.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 353 | 27.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 371 | 27.49 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 402 | 27.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 427 | 27.58 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 9 |
| 440 | 27.60 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 458 | 27.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 461 | 27.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 487 | 27.65 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 490 | 27.65 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 515 | 27.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 516 | 27.68 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 521 | 27.68 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 11 |
| 536 | 27.70 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 538 | 27.70 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 539 | 27.70 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 569 | 27.73 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 596 | 27.75 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 605 | 27.76 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 677 | 27.82 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 764 | 27.87 | wind | 3 | 43200 | > th | dose dependent | sin | 1 | NA |
| 813 | 27.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 900 | 27.95 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 989 | 28.00 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 991 | 28.00 | wind | 9 | 43200 | < th | dose dependent | sin | 2 | NA |