BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0516700 Os01g0516700|015-014-C10
         (313 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0516700  Glycosyl transferase, family 28 domain contain...   422   e-118

>Os01g0516700 Glycosyl transferase, family 28 domain containing protein
          Length = 313

 Score =  422 bits (1085), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/289 (76%), Positives = 221/289 (76%)

Query: 25  FTQYNSPDDPPRGLRGARRLTXXXXXXXXXXXXXXXXXXXXDSASDPDPLRVAFACGGAG 84
           FTQYNSPDDPPRGLRGARRLT                    DSASDPDPLRVAFACGGAG
Sbjct: 25  FTQYNSPDDPPRGLRGARRLTLSPSPARRRARSLHLRCRLSDSASDPDPLRVAFACGGAG 84

Query: 85  GHVYAAIALADELHASLPSSASLFLGAPPPSLESDAAASAPYPFAPIPRCLPHAVLDAAL 144
           GHVYAAIALADELHASLPSSASLFLGAPPPSLESDAAASAPYPFAPIPRCLPHAVLDAAL
Sbjct: 85  GHVYAAIALADELHASLPSSASLFLGAPPPSLESDAAASAPYPFAPIPRCLPHAVLDAAL 144

Query: 145 HLRRFRPHVLVATGGXXXXXXXXXXXXXGVPFVIQDQDXXXXXXXXXXXXXXXXIFLGFN 204
           HLRRFRPHVLVATGG             GVPFVIQDQD                IFLGFN
Sbjct: 145 HLRRFRPHVLVATGGAPALPACLAALLLGVPFVIQDQDAGPAPATRLLAPLARRIFLGFN 204

Query: 205 APVRLLPKRKCAVYGNPVRMSIRKCRISKADAMASFFPRIXXXXXXXXXXXXXXXXXXXS 264
           APVRLLPKRKCAVYGNPVRMSIRKCRISKADAMASFFPRI                   S
Sbjct: 205 APVRLLPKRKCAVYGNPVRMSIRKCRISKADAMASFFPRIGTVGEEGVEVLLVLGGTEGS 264

Query: 265 PEINVALLNMYYEMLRERRNRYIIWQTGPEGFCEMESLVRSHRRLLLTP 313
           PEINVALLNMYYEMLRERRNRYIIWQTGPEGFCEMESLVRSHRRLLLTP
Sbjct: 265 PEINVALLNMYYEMLRERRNRYIIWQTGPEGFCEMESLVRSHRRLLLTP 313



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,998,944
Number of extensions: 345539
Number of successful extensions: 2255
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2252
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 212
Effective length of database: 11,762,187
Effective search space: 2493583644
Effective search space used: 2493583644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)