BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0514300 Os01g0514300|AK121086
(1183 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0514300 Lissencephaly type-1-like homology motif domai... 2260 0.0
>Os01g0514300 Lissencephaly type-1-like homology motif domain containing protein
Length = 1183
Score = 2260 bits (5857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1111/1183 (93%), Positives = 1111/1183 (93%)
Query: 1 MEATGAGAGEERWASLCNCVVNFLLEERYHLTAXXXXXXXXXDGRHAHALRLRSFFSDPA 60
MEATGAGAGEERWASLCNCVVNFLLEERYHLTA DGRHAHALRLRSFFSDPA
Sbjct: 1 MEATGAGAGEERWASLCNCVVNFLLEERYHLTALELLQELQEDGRHAHALRLRSFFSDPA 60
Query: 61 LFPPDLVARASSAPPGADPQSXXXXXXXXXXXXXXTDYDLRLAREDLSRLKLELQKQKES 120
LFPPDLVARASSAPPGADPQS TDYDLRLAREDLSRLKLELQKQKES
Sbjct: 61 LFPPDLVARASSAPPGADPQSLLEEKIAAEEKLALTDYDLRLAREDLSRLKLELQKQKES 120
Query: 121 SPDGSNATDALTNEGSSHHDKRDAKISTLGPLKDNERKDLNCAVKEYLLLAGYRLAAMTF 180
SPDGSNATDALTNEGSSHHDKRDAKISTLGPLKDNERKDLNCAVKEYLLLAGYRLAAMTF
Sbjct: 121 SPDGSNATDALTNEGSSHHDKRDAKISTLGPLKDNERKDLNCAVKEYLLLAGYRLAAMTF 180
Query: 181 IEEVPDQDLDVWINSSACVPDALRRYYYQYLSSTTEAAEEKISILRENETLLKDNESLGA 240
IEEVPDQDLDVWINSSACVPDALRRYYYQYLSSTTEAAEEKISILRENETLLKDNESLGA
Sbjct: 181 IEEVPDQDLDVWINSSACVPDALRRYYYQYLSSTTEAAEEKISILRENETLLKDNESLGA 240
Query: 241 EKDALIKSREVANSQIAALRKSLEAAHKDIKEKEKTVQDLKQSLDVQRKELNDCRAEITS 300
EKDALIKSREVANSQIAALRKSLEAAHKDIKEKEKTVQDLKQSLDVQRKELNDCRAEITS
Sbjct: 241 EKDALIKSREVANSQIAALRKSLEAAHKDIKEKEKTVQDLKQSLDVQRKELNDCRAEITS 300
Query: 301 LKMHIEGTRSSKRLSSGDTDGLIPANSMEEIVVLSSEHDNLKGSESITSKLASEVSLAEG 360
LKMHIEGTRSSKRLSSGDTDGLIPANSMEEIVVLSSEHDNLKGSESITSKLASEVSLAEG
Sbjct: 301 LKMHIEGTRSSKRLSSGDTDGLIPANSMEEIVVLSSEHDNLKGSESITSKLASEVSLAEG 360
Query: 361 KKKDHENMESSLEGSPGPEAEVSCSTAENSGYGTSGEDKSGTNTCFEDLSVNGNLHGSGN 420
KKKDHENMESSLEGSPGPEAEVSCSTAENSGYGTSGEDKSGTNTCFEDLSVNGNLHGSGN
Sbjct: 361 KKKDHENMESSLEGSPGPEAEVSCSTAENSGYGTSGEDKSGTNTCFEDLSVNGNLHGSGN 420
Query: 421 SQGDSDSISVYLTDDKVHTEKVESPYKQKSSDKMALETIKIVSDALPKIVPYVLINHREE 480
SQGDSDSISVYLTDDKVHTEKVESPYKQKSSDKMALETIKIVSDALPKIVPYVLINHREE
Sbjct: 421 SQGDSDSISVYLTDDKVHTEKVESPYKQKSSDKMALETIKIVSDALPKIVPYVLINHREE 480
Query: 481 LLPLIICAIEKHPDSDVRDSLTHTLFNLIKRPDGQQRRIIMDACVELAKSVGEMRTETEL 540
LLPLIICAIEKHPDSDVRDSLTHTLFNLIKRPDGQQRRIIMDACVELAKSVGEMRTETEL
Sbjct: 481 LLPLIICAIEKHPDSDVRDSLTHTLFNLIKRPDGQQRRIIMDACVELAKSVGEMRTETEL 540
Query: 541 LPQCWEQINHQYEERRLLVAQSCGELAVYVRPEIRDSLILSIVQQLVEDSATVVREAATH 600
LPQCWEQINHQYEERRLLVAQSCGELAVYVRPEIRDSLILSIVQQLVEDSATVVREAATH
Sbjct: 541 LPQCWEQINHQYEERRLLVAQSCGELAVYVRPEIRDSLILSIVQQLVEDSATVVREAATH 600
Query: 601 XXXXXXXXXXXXDKYYKVEELMFQLVCDPSGAVVNVALKELVPAVVRWGDKLDQILRILL 660
DKYYKVEELMFQLVCDPSGAVVNVALKELVPAVVRWGDKLDQILRILL
Sbjct: 601 NLTLLLPLFPNLDKYYKVEELMFQLVCDPSGAVVNVALKELVPAVVRWGDKLDQILRILL 660
Query: 661 AHILASAQRCPPVSGVEGAIDSHLRVLGEQERWNIDVLLRMLTELLPFIHQKAISTCPFA 720
AHILASAQRCPPVSGVEGAIDSHLRVLGEQERWNIDVLLRMLTELLPFIHQKAISTCPFA
Sbjct: 661 AHILASAQRCPPVSGVEGAIDSHLRVLGEQERWNIDVLLRMLTELLPFIHQKAISTCPFA 720
Query: 721 ADPSTGTMPESYFSKSCLKLYAAGDTEWSAFEWMHTECLPDLIKLACLLPAKEDNLRTVI 780
ADPSTGTMPESYFSKSCLKLYAAGDTEWSAFEWMHTECLPDLIKLACLLPAKEDNLRTVI
Sbjct: 721 ADPSTGTMPESYFSKSCLKLYAAGDTEWSAFEWMHTECLPDLIKLACLLPAKEDNLRTVI 780
Query: 781 RKYLLDVSGRYGIDYLEHVMLPVFLVAAGDIDSSDFTYFPLATQSRVRGLRPKTSIAEKL 840
RKYLLDVSGRYGIDYLEHVMLPVFLVAAGDIDSSDFTYFPLATQSRVRGLRPKTSIAEKL
Sbjct: 781 RKYLLDVSGRYGIDYLEHVMLPVFLVAAGDIDSSDFTYFPLATQSRVRGLRPKTSIAEKL 840
Query: 841 GIVCVLPLLLSGILGYPSKRQQLEEYLRKLLIQNTKDGSFSMHHTAEIIDAVRFLCMFEE 900
GIVCVLPLLLSGILGYPSKRQQLEEYLRKLLIQNTKDGSFSMHHTAEIIDAVRFLCMFEE
Sbjct: 841 GIVCVLPLLLSGILGYPSKRQQLEEYLRKLLIQNTKDGSFSMHHTAEIIDAVRFLCMFEE 900
Query: 901 HHVAVFNIVWEMVVISDXXXXXXXXXXXXXXVPYISVKVASTHVLPALITLGSDQNLTVK 960
HHVAVFNIVWEMVVISD VPYISVKVASTHVLPALITLGSDQNLTVK
Sbjct: 901 HHVAVFNIVWEMVVISDANLKTNAAALLKALVPYISVKVASTHVLPALITLGSDQNLTVK 960
Query: 961 YASIEAFGAVAQHFKNDMVVDKIRIQMDAFLEDGSHEATVSVIRALAVAVPHTTDRLREY 1020
YASIEAFGAVAQHFKNDMVVDKIRIQMDAFLEDGSHEATVSVIRALAVAVPHTTDRLREY
Sbjct: 961 YASIEAFGAVAQHFKNDMVVDKIRIQMDAFLEDGSHEATVSVIRALAVAVPHTTDRLREY 1020
Query: 1021 LLTKIFKLTSAPPTGNDIERRREIANVFCEALRAVDATDLPATSVRDLLLPSIQNLLKDL 1080
LLTKIFKLTSAPPTGNDIERRREIANVFCEALRAVDATDLPATSVRDLLLPSIQNLLKDL
Sbjct: 1021 LLTKIFKLTSAPPTGNDIERRREIANVFCEALRAVDATDLPATSVRDLLLPSIQNLLKDL 1080
Query: 1081 DALDPAHKEALEVIARERSGGKLESLGKVMGAHLGIAXXXXXXXXXXXLLVKKESGEQHD 1140
DALDPAHKEALEVIARERSGGKLESLGKVMGAHLGIA LLVKKESGEQHD
Sbjct: 1081 DALDPAHKEALEVIARERSGGKLESLGKVMGAHLGIASSMSSFFGESSLLVKKESGEQHD 1140
Query: 1141 TAAXXXXXXXXXXXXENTRFGRIMLGGFGDMLRGKAKGSDEPS 1183
TAA ENTRFGRIMLGGFGDMLRGKAKGSDEPS
Sbjct: 1141 TAATTPSQPTPQTQQENTRFGRIMLGGFGDMLRGKAKGSDEPS 1183
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 36,967,321
Number of extensions: 1466466
Number of successful extensions: 4840
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4839
Number of HSP's successfully gapped: 1
Length of query: 1183
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1071
Effective length of database: 11,187,833
Effective search space: 11982169143
Effective search space used: 11982169143
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 162 (67.0 bits)