Os01g0514300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lissencephaly type-1-like homology motif domain containing protein.
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Os01g0514300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lissencephaly type-1-like homology motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.25 | 0.254 | 8.94 | -0.209 | 0.65 | 0.959 | -0.259 | -0.91 | -0.0362 | 9.88 | 25.78 | 256 | -- | -- |
| 29.47 | 0.253 | 8.93 | -0.13 | 0.678 | 0.881 | -0.276 | -- | -0.0331 | 9.84 | 25.3 | 293 | -- | -- |
| 29.5 | 0.253 | 8.94 | -0.214 | 0.65 | 0.951 | -- | -0.88 | -0.0321 | 9.94 | 25.83 | 259 | -- | -- |
| 29.65 | 0.254 | 8.93 | -0.123 | 0.676 | 0.864 | -- | -- | -0.0212 | 9.99 | 25.7 | 295 | -- | -- |
| 43.57 | 0.309 | 8.99 | -0.308 | -- | 1.12 | -- | -1.19 | -0.144 | -- | 24.02 | 18 | -- | -- |
| 42.27 | 0.305 | 8.93 | 0.0231 | 0.674 | -- | -0.0895 | -- | 0.0275 | 12.2 | -- | -- | -- | -- |
| 42.3 | 0.305 | 8.93 | 0.0197 | 0.675 | -- | -- | -- | 0.0272 | 12.2 | -- | -- | -- | -- |
| 43.85 | 0.31 | 8.98 | -0.202 | -- | 1.08 | -- | -- | -0.15 | -- | 21.14 | 8 | -- | -- |
| 30 | 0.255 | 8.93 | -- | 0.675 | 0.84 | -- | -- | -0.00161 | 10 | 25.78 | 297 | -- | -- |
| 70.95 | 0.394 | 8.94 | -0.00215 | -- | -- | -- | -- | 0.0171 | -- | -- | -- | -- | -- |
| 42.31 | 0.304 | 8.93 | -- | 0.674 | -- | -- | -- | 0.025 | 12.2 | -- | -- | -- | -- |
| 44.62 | 0.311 | 8.97 | -- | -- | 1.01 | -- | -- | -0.104 | -- | 22.97 | 2 | -- | -- |
| 70.95 | 0.393 | 8.94 | -- | -- | -- | -- | -- | 0.0173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.70 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 2 | 28.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 4 | 29.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 6 | 29.12 | temperature | 20 | 270 | > th | dose dependent | sin | 22 | NA |
| 10 | 29.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 13 | 29.26 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 19 |
| 19 | 29.28 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 23 | 29.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 44 | 29.36 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 56 | 29.37 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 104 | 29.48 | temperature | 25 | 90 | > th | dose dependent | sin | 19 | NA |
| 108 | 29.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 12 |
| 112 | 29.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 198 | 29.81 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 260 | 29.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 354 | 30.22 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 13 |
| 402 | 30.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 474 | 30.53 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 568 | 30.72 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 596 | 30.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 18 |
| 597 | 30.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 698 | 30.90 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 20 |
| 755 | 30.99 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |
| 771 | 31.02 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 23 |
| 875 | 31.14 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 956 | 31.23 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 7 |
| 965 | 31.25 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 997 | 31.29 | temperature | 30 | 270 | > th | dose independent | sin | 21 | NA |