BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0510200 Os01g0510200|AK062310
         (114 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0510200  Conserved hypothetical protein                      199   5e-52
Os01g0786200                                                       73   6e-14

>Os01g0510200 Conserved hypothetical protein
          Length = 114

 Score =  199 bits (505), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 99/114 (86%), Positives = 99/114 (86%)

Query: 1   MRREGRQRGWVCVYDRALVDPEGKRRXXXXXXXXXXXXXXXFIRAPRKPTNHSKFTGGRA 60
           MRREGRQRGWVCVYDRALVDPEGKRR               FIRAPRKPTNHSKFTGGRA
Sbjct: 1   MRREGRQRGWVCVYDRALVDPEGKRRVVGAVAAPATVANGGFIRAPRKPTNHSKFTGGRA 60

Query: 61  FRELASGKGACSGGPAASTTGGKGRHKFKHDEIKAYYLELEAGADDAVDELGSL 114
           FRELASGKGACSGGPAASTTGGKGRHKFKHDEIKAYYLELEAGADDAVDELGSL
Sbjct: 61  FRELASGKGACSGGPAASTTGGKGRHKFKHDEIKAYYLELEAGADDAVDELGSL 114



>Os01g0786200 
          Length = 114

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 56/112 (50%), Gaps = 20/112 (17%)

Query: 1   MRREGRQRGWVCVYDRALVDPE------GKRRXXXXXXXXXXXXXXXFIRAPRKPTNHSK 54
           MRREGR  GWV  Y   LVDP       GK +               F+R  RKPTNHSK
Sbjct: 1   MRREGRMHGWV--YAHKLVDPMDPDGAGGKAKRRVVHDITKQMANGGFVRVSRKPTNHSK 58

Query: 55  FTGGRAFRELASGKGACSGGPAASTTGGKGRHKFKHDEIKAYYLELEAGADD 106
           +TG   + E  + +  C           KGR+KFKHDEIK YYL++E   DD
Sbjct: 59  YTGRDPY-EAYTKRKTC-----------KGRNKFKHDEIKMYYLDVEGLDDD 98



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,430,767
Number of extensions: 192408
Number of successful extensions: 775
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 773
Number of HSP's successfully gapped: 2
Length of query: 114
Length of database: 17,035,801
Length adjustment: 81
Effective length of query: 33
Effective length of database: 12,806,467
Effective search space: 422613411
Effective search space used: 422613411
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)