BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0507400 Os01g0507400|Os01g0507400
(161 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0507400 183 4e-47
Os07g0195800 147 4e-36
Os11g0686300 86 9e-18
Os08g0441700 Peptidase aspartic, catalytic domain containin... 71 4e-13
>Os01g0507400
Length = 161
Score = 183 bits (465), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 96/161 (59%), Positives = 96/161 (59%)
Query: 1 MRLRLMRGTNPIRSAYIAADNRECYNCGQVGHVSYNCPXXXXXXXXXXXXXXXXXXXXXX 60
MRLRLMRGTNPIRSAYIAADNRECYNCGQVGHVSYNCP
Sbjct: 1 MRLRLMRGTNPIRSAYIAADNRECYNCGQVGHVSYNCPTSRNIGGRGSIRGGHGGTRGGF 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQANAATEDGKAVTLIGEQVTQWEEWQXX 120
PQANAATEDGKAVTLIGEQVTQWEEWQ
Sbjct: 61 GGDRGGFGGNRGGRGGDRGGRVGGRGRGRGVPQANAATEDGKAVTLIGEQVTQWEEWQKN 120
Query: 121 XXXXXXXXXXHFGNFANYAQVGEGSRKGETKGCASLPKEAV 161
HFGNFANYAQVGEGSRKGETKGCASLPKEAV
Sbjct: 121 KTNESSNTTTHFGNFANYAQVGEGSRKGETKGCASLPKEAV 161
>Os07g0195800
Length = 378
Score = 147 bits (370), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 77/145 (53%)
Query: 1 MRLRLMRGTNPIRSAYIAADNRECYNCGQVGHVSYNCPXXXXXXXXXXXXXXXXXXXXXX 60
MRLRLMRGTNPIRSAYIAADNRECYNCGQVGHVSYNCP
Sbjct: 1 MRLRLMRGTNPIRSAYIAADNRECYNCGQVGHVSYNCPTSRNIGGRGSIRGGHGGTRGGF 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQANAATEDGKAVTLIGEQVTQWEEWQXX 120
PQANA EDGKAVTLIGEQVTQWEEWQ
Sbjct: 61 RGDRGGFGGNRGGRGGDRGGRVGGRGRGRGVPQANAVKEDGKAVTLIGEQVTQWEEWQKN 120
Query: 121 XXXXXXXXXXHFGNFANYAQVGEGS 145
HFGNFANYAQVGEG
Sbjct: 121 KTNESSNTTTHFGNFANYAQVGEGD 145
>Os11g0686300
Length = 260
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 MRLRLMRGTNPIRSAYIAADNRECYNCGQVGHVSYNCP 38
MRLRLMR TNPIRSAYIAADNRECYNCGQVGHVSYNCP
Sbjct: 159 MRLRLMRSTNPIRSAYIAADNRECYNCGQVGHVSYNCP 196
>Os08g0441700 Peptidase aspartic, catalytic domain containing protein
Length = 309
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 35/50 (70%)
Query: 95 NAATEDGKAVTLIGEQVTQWEEWQXXXXXXXXXXXXHFGNFANYAQVGEG 144
+ A E+GKA+TL GEQVTQWEEWQ HFGNFANYAQVGEG
Sbjct: 46 HVAIEEGKAITLTGEQVTQWEEWQKNKINESSNTTTHFGNFANYAQVGEG 95
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,340,918
Number of extensions: 77079
Number of successful extensions: 766
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 6
Length of query: 161
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 68
Effective length of database: 12,179,899
Effective search space: 828233132
Effective search space used: 828233132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)