Os01g0507400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0507400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.07 | 0.404 | 3.54 | 0.295 | 0.298 | 0.435 | 0.324 | 1.17 | 0.0621 | 11.2 | 0.3583 | 5413 | -- | -- |
| 74.46 | 0.402 | 3.56 | 0.258 | 0.302 | 0.657 | 0.341 | -- | 0.0683 | 11.2 | 0.4454 | 5734 | -- | -- |
| 74.51 | 0.402 | 3.54 | 0.309 | 0.296 | 0.428 | -- | 1.19 | 0.0637 | 11.3 | 0.349 | 5393 | -- | -- |
| 74.89 | 0.403 | 3.56 | 0.26 | 0.299 | 0.659 | -- | -- | 0.0656 | 11.2 | 0.4369 | 5331 | -- | -- |
| 79.96 | 0.416 | 3.55 | 0.316 | -- | 0.409 | -- | 1.21 | 0.0561 | -- | 0.3217 | 5412 | -- | -- |
| 84.42 | 0.431 | 3.58 | 0.477 | 0.287 | -- | 0.26 | -- | 0.00559 | 11 | -- | -- | -- | -- |
| 84.7 | 0.431 | 3.58 | 0.488 | 0.286 | -- | -- | -- | 0.00681 | 11.2 | -- | -- | -- | -- |
| 80.36 | 0.418 | 3.57 | 0.267 | -- | 0.67 | -- | -- | 0.0769 | -- | 0.4102 | 5402 | -- | -- |
| 76.58 | 0.408 | 3.56 | -- | 0.305 | 0.735 | -- | -- | 0.0442 | 11.1 | 0.4432 | 5331 | -- | -- |
| 89.8 | 0.443 | 3.59 | 0.482 | -- | -- | -- | -- | 0.00437 | -- | -- | -- | -- | -- |
| 90.98 | 0.446 | 3.59 | -- | 0.281 | -- | -- | -- | -0.0476 | 11 | -- | -- | -- | -- |
| 82.02 | 0.422 | 3.58 | -- | -- | 0.746 | -- | -- | 0.0493 | -- | 0.427 | 5400 | -- | -- |
| 95.92 | 0.457 | 3.6 | -- | -- | -- | -- | -- | -0.0491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.16 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 2 | 73.16 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 11 | 7 |
| 3 | 73.17 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 15 | 73.43 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 35 | 73.69 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 3 | 15 |
| 41 | 73.79 | precipitation | 1e-01 | 4320 | > th | dose dependent | sin | 23 | NA |
| 50 | 73.85 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 21 | 21 |
| 57 | 73.90 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 64 | 74.02 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 91 | 74.34 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 11 | 16 |
| 93 | 74.35 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 13 | 14 |
| 97 | 74.36 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 10 | 14 |
| 98 | 74.37 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 13 | 11 |
| 122 | 74.39 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 5 | 22 |
| 128 | 74.41 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 131 | 74.42 | precipitation | 1e-01 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 132 | 74.42 | precipitation | 1e-01 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 134 | 74.42 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 5 | 19 |
| 147 | 74.45 | precipitation | 1e-01 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 163 | 74.53 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 164 | 74.53 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 177 | 74.57 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 178 | 74.57 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 185 | 74.60 | precipitation | 1e-01 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 186 | 74.60 | precipitation | 1e-01 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 187 | 74.61 | precipitation | 1e-01 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 222 | 74.76 | precipitation | 1e-01 | 4320 | < th | dose independent | sin | 22 | NA |
| 223 | 74.76 | precipitation | 1e-01 | 4320 | < th | dose dependent | sin | 22 | NA |
| 225 | 74.77 | precipitation | 1e-01 | 4320 | > th | dose independent | sin | 22 | NA |
| 227 | 74.78 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 231 | 74.79 | humidity | 8e+01 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 238 | 74.83 | humidity | 8e+01 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 314 | 74.98 | humidity | 8e+01 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 382 | 75.05 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 384 | 75.05 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 423 | 75.07 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 427 | 75.08 | precipitation | 1e-01 | 4320 | > th | dose dependent | no | NA | NA |
| 457 | 75.12 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 556 | 75.26 | wind | 3e+00 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 644 | 75.35 | wind | 9e+00 | 43200 | > th | dose dependent | sin | 14 | NA |
| 691 | 75.43 | wind | 5e+00 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 696 | 75.44 | wind | 9e+00 | 43200 | > th | dose dependent | sin | 17 | NA |
| 729 | 75.48 | wind | 5e+00 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 730 | 75.49 | wind | 1e+00 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 741 | 75.50 | wind | 1e+00 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 761 | 75.53 | radiation | 1e+00 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 781 | 75.57 | wind | 5e+00 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 782 | 75.57 | wind | 3e+00 | 43200 | > th | dose dependent | sin | 13 | NA |
| 794 | 75.59 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 795 | 75.60 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 808 | 75.62 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 812 | 75.62 | wind | 5e+00 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 813 | 75.62 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 838 | 75.65 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 852 | 75.67 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 861 | 75.67 | humidity | 8e+01 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 870 | 75.68 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 879 | 75.69 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 880 | 75.70 | humidity | 7e+01 | 720 | > th | dose independent | sin | 11 | NA |
| 888 | 75.71 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 891 | 75.71 | humidity | 8e+01 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 901 | 75.72 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 902 | 75.72 | humidity | 8e+01 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 914 | 75.73 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 927 | 75.74 | wind | 5e+00 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 942 | 75.75 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 945 | 75.75 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 965 | 75.77 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 981 | 75.78 | wind | 1e+00 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 984 | 75.78 | radiation | 1e+00 | 43200 | < th | dose dependent | rect. | 19 | 7 |