BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0377700 Os01g0377700|AK059266
         (415 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0377700  Ubiquitin domain containing protein                 738   0.0  
Os01g0963900                                                      105   5e-23
Os08g0207400                                                      103   3e-22

>Os01g0377700 Ubiquitin domain containing protein
          Length = 415

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/415 (89%), Positives = 371/415 (89%)

Query: 1   MILRIRSRDGTDRITVPDPAAATVGDLQRLIAARVTVPVPLQXXXXXXXXXXXXXXXXXX 60
           MILRIRSRDGTDRITVPDPAAATVGDLQRLIAARVTVPVPLQ                  
Sbjct: 1   MILRIRSRDGTDRITVPDPAAATVGDLQRLIAARVTVPVPLQRLSLDPALLLPSSASAAL 60

Query: 61  XXXXXXXXXXXXXXNGSFVYLSYXXXXXXXXXXXXKALSAAGSFGKKMTMDDLIARQIRV 120
                         NGSFVYLSY            KALSAAGSFGKKMTMDDLIARQIRV
Sbjct: 61  LADPAAPLSSLRLSNGSFVYLSYPPDARSSQPPPPKALSAAGSFGKKMTMDDLIARQIRV 120

Query: 121 TRQEAPLCAAASFDRDSANAFQLHVAESLAFATKRAGFLYGRVDADTKEVFVDFIYEPPQ 180
           TRQEAPLCAAASFDRDSANAFQLHVAESLAFATKRAGFLYGRVDADTKEVFVDFIYEPPQ
Sbjct: 121 TRQEAPLCAAASFDRDSANAFQLHVAESLAFATKRAGFLYGRVDADTKEVFVDFIYEPPQ 180

Query: 181 VGTEDVVQLMRDAQEEARVDAIAHGLGMRRVGLVFTQAVGRKTSDTGEYTMSNREVLQAT 240
           VGTEDVVQLMRDAQEEARVDAIAHGLGMRRVGLVFTQAVGRKTSDTGEYTMSNREVLQAT
Sbjct: 181 VGTEDVVQLMRDAQEEARVDAIAHGLGMRRVGLVFTQAVGRKTSDTGEYTMSNREVLQAT 240

Query: 241 ELQAEGGIPEWVTAIVKLEVGDDGSGDVHFEAFQMSEICVKLFKDGVLETEIGDKDDPRL 300
           ELQAEGGIPEWVTAIVKLEVGDDGSGDVHFEAFQMSEICVKLFKDGVLETEIGDKDDPRL
Sbjct: 241 ELQAEGGIPEWVTAIVKLEVGDDGSGDVHFEAFQMSEICVKLFKDGVLETEIGDKDDPRL 300

Query: 301 SKMRKEVVAGGKDTMEVDNDFFLVPVKISDHQGPLSTGFPIENRGNPVAMSALKSHLDRA 360
           SKMRKEVVAGGKDTMEVDNDFFLVPVKISDHQGPLSTGFPIENRGNPVAMSALKSHLDRA
Sbjct: 301 SKMRKEVVAGGKDTMEVDNDFFLVPVKISDHQGPLSTGFPIENRGNPVAMSALKSHLDRA 360

Query: 361 KHLPFVKRISDFHLLLLVAAFLDIKADVPALTACVKNQSVVPEGYQLLIESLAGA 415
           KHLPFVKRISDFHLLLLVAAFLDIKADVPALTACVKNQSVVPEGYQLLIESLAGA
Sbjct: 361 KHLPFVKRISDFHLLLLVAAFLDIKADVPALTACVKNQSVVPEGYQLLIESLAGA 415



>Os01g0963900 
          Length = 108

 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/54 (90%), Positives = 53/54 (98%)

Query: 280 VKLFKDGVLETEIGDKDDPRLSKMRKEVVAGGKDTMEVDNDFFLVPVKISDHQG 333
           ++LFKDGVL+T+I DKDDPRLSKMRKEVVAGGKDTMEVDNDFFLVPVKISDHQG
Sbjct: 47  LQLFKDGVLQTKIRDKDDPRLSKMRKEVVAGGKDTMEVDNDFFLVPVKISDHQG 100



>Os08g0207400 
          Length = 180

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/54 (87%), Positives = 51/54 (94%)

Query: 280 VKLFKDGVLETEIGDKDDPRLSKMRKEVVAGGKDTMEVDNDFFLVPVKISDHQG 333
           ++LFKDGVL+T+I DKDDPRLSKMRKEVVAGGKD MEVDNDFFLVPVKISDHQ 
Sbjct: 101 LQLFKDGVLQTKIRDKDDPRLSKMRKEVVAGGKDAMEVDNDFFLVPVKISDHQN 154



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,185,644
Number of extensions: 482022
Number of successful extensions: 996
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 995
Number of HSP's successfully gapped: 3
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)