BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0358300 Os01g0358300|AK072081
         (455 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0358300  Tetratricopeptide-like helical domain containi...   849   0.0  

>Os01g0358300 Tetratricopeptide-like helical domain containing protein
          Length = 455

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/455 (93%), Positives = 426/455 (93%)

Query: 1   MAAAGASALRPHLALLPAXXXXXXXXXTRSYALQALSFVSPLLPHCGRRRRCVLRSKAXX 60
           MAAAGASALRPHLALLPA         TRSYALQALSFVSPLLPHCGRRRRCVLRSKA  
Sbjct: 1   MAAAGASALRPHLALLPAGGGGGGGGGTRSYALQALSFVSPLLPHCGRRRRCVLRSKASS 60

Query: 61  XXXXXXXXGKEAVAVPTAESCVNLGLELFSKGRVKDALEQFENALELNPNPVEAQAALYN 120
                   GKEAVAVPTAESCVNLGLELFSKGRVKDALEQFENALELNPNPVEAQAALYN
Sbjct: 61  SPSPPPSPGKEAVAVPTAESCVNLGLELFSKGRVKDALEQFENALELNPNPVEAQAALYN 120

Query: 121 KACCHAFREESNKAADCLRTALRDYNLKFGTILNDPDLAPFRASPEFKELQEEALRGGED 180
           KACCHAFREESNKAADCLRTALRDYNLKFGTILNDPDLAPFRASPEFKELQEEALRGGED
Sbjct: 121 KACCHAFREESNKAADCLRTALRDYNLKFGTILNDPDLAPFRASPEFKELQEEALRGGED 180

Query: 181 IGSGFRRDLKLISEVQAPFRGVRRFFYVALTAAAGISTFFTIPRLILAVQGGDGAPDLLE 240
           IGSGFRRDLKLISEVQAPFRGVRRFFYVALTAAAGISTFFTIPRLILAVQGGDGAPDLLE
Sbjct: 181 IGSGFRRDLKLISEVQAPFRGVRRFFYVALTAAAGISTFFTIPRLILAVQGGDGAPDLLE 240

Query: 241 TVGNAAINIGGIVVLVALYFWENKKEEQQITQISRNETLSRLPVRLSTNRIIELVQLRDI 300
           TVGNAAINIGGIVVLVALYFWENKKEEQQITQISRNETLSRLPVRLSTNRIIELVQLRDI
Sbjct: 241 TVGNAAINIGGIVVLVALYFWENKKEEQQITQISRNETLSRLPVRLSTNRIIELVQLRDI 300

Query: 301 TRPVILAGSKASITRAMQRAERYRTELLKRGVLLIPVIFGASQKAQSKPRGFGXXXXXXX 360
           TRPVILAGSKASITRAMQRAERYRTELLKRGVLLIPVIFGASQKAQSKPRGFG       
Sbjct: 301 TRPVILAGSKASITRAMQRAERYRTELLKRGVLLIPVIFGASQKAQSKPRGFGSSRSAAS 360

Query: 361 XXXVGDDFEKRTESIAAKSRLKAEERFKADIVSPEQWESWIRDQQESEGVTPGEDVYIIL 420
              VGDDFEKRTESIAAKSRLKAEERFKADIVSPEQWESWIRDQQESEGVTPGEDVYIIL
Sbjct: 361 APSVGDDFEKRTESIAAKSRLKAEERFKADIVSPEQWESWIRDQQESEGVTPGEDVYIIL 420

Query: 421 RLDGRVRRSGRGMPNWNDILQELPRLEELLSKLER 455
           RLDGRVRRSGRGMPNWNDILQELPRLEELLSKLER
Sbjct: 421 RLDGRVRRSGRGMPNWNDILQELPRLEELLSKLER 455



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,857,100
Number of extensions: 552485
Number of successful extensions: 1264
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1264
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 351
Effective length of database: 11,605,545
Effective search space: 4073546295
Effective search space used: 4073546295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)