BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0355600 Os01g0355600|AK100134
(1067 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0355600 Galactose-binding like domain containing protein 2040 0.0
>Os01g0355600 Galactose-binding like domain containing protein
Length = 1067
Score = 2040 bits (5284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1011/1067 (94%), Positives = 1011/1067 (94%)
Query: 1 GSTMLAPVNHLAELFLLAGDIHATLYTGSKAMHSEILNIFKEETGKFSKFSAAQNVKITL 60
GSTMLAPVNHLAELFLLAGDIHATLYTGSKAMHSEILNIFKEETGKFSKFSAAQNVKITL
Sbjct: 1 GSTMLAPVNHLAELFLLAGDIHATLYTGSKAMHSEILNIFKEETGKFSKFSAAQNVKITL 60
Query: 61 QRRFQNYINDSSRQKQFEMFLGLRLFKHLPSIPISPLKVLSRPSGCMLKPVPSITPVADG 120
QRRFQNYINDSSRQKQFEMFLGLRLFKHLPSIPISPLKVLSRPSGCMLKPVPSITPVADG
Sbjct: 61 QRRFQNYINDSSRQKQFEMFLGLRLFKHLPSIPISPLKVLSRPSGCMLKPVPSITPVADG 120
Query: 121 GSSLLSFKKKDLTWVCQQGADYVELFIYLGEPCQVCQLLLTVSHGVDDSSYPATIDVRVG 180
GSSLLSFKKKDLTWVCQQGADYVELFIYLGEPCQVCQLLLTVSHGVDDSSYPATIDVRVG
Sbjct: 121 GSSLLSFKKKDLTWVCQQGADYVELFIYLGEPCQVCQLLLTVSHGVDDSSYPATIDVRVG 180
Query: 181 SSVDTLKLVLEGACIPQCSNGTNLLIPLTGRIDPEDLAVTGKSARPNIQESTYLPLLYDX 240
SSVDTLKLVLEGACIPQCSNGTNLLIPLTGRIDPEDLAVTGKSARPNIQESTYLPLLYD
Sbjct: 181 SSVDTLKLVLEGACIPQCSNGTNLLIPLTGRIDPEDLAVTGKSARPNIQESTYLPLLYDF 240
Query: 241 XXXXXXXXXXXRVVALSFHPSARARTPITLGEIEVLGVSLPWVDMLTDSRRGPDFVELLH 300
RVVALSFHPSARARTPITLGEIEVLGVSLPWVDMLTDSRRGPDFVELLH
Sbjct: 241 EELEGELNFLNRVVALSFHPSARARTPITLGEIEVLGVSLPWVDMLTDSRRGPDFVELLH 300
Query: 301 EKLSSIPGNVGSKEFANSSNSFLPQNGIVGXXXXXXXXXXXXXXXXXXGNFVDFLTGDFD 360
EKLSSIPGNVGSKEFANSSNSFLPQNGIVG GNFVDFLTGDFD
Sbjct: 301 EKLSSIPGNVGSKEFANSSNSFLPQNGIVGSERASSTKSSSSVLQGSSGNFVDFLTGDFD 360
Query: 361 MPNQSDATENTSFVNVEQTNSFDDDFDVNPFATASETPSAKVNSQVEEFDSAHIYLKFFE 420
MPNQSDATENTSFVNVEQTNSFDDDFDVNPFATASETPSAKVNSQVEEFDSAHIYLKFFE
Sbjct: 361 MPNQSDATENTSFVNVEQTNSFDDDFDVNPFATASETPSAKVNSQVEEFDSAHIYLKFFE 420
Query: 421 SFSGNIKGKGLNFEQMMKLEIKRLCLDLSAAERDRALLSIGVIPATVDPNRSVDYSYLLK 480
SFSGNIKGKGLNFEQMMKLEIKRLCLDLSAAERDRALLSIGVIPATVDPNRSVDYSYLLK
Sbjct: 421 SFSGNIKGKGLNFEQMMKLEIKRLCLDLSAAERDRALLSIGVIPATVDPNRSVDYSYLLK 480
Query: 481 LSSLADYLALLGHTVHEDRVNASIGLENINGHAIDFWNICENDESCTGDVCEVRXXXXXX 540
LSSLADYLALLGHTVHEDRVNASIGLENINGHAIDFWNICENDESCTGDVCEVR
Sbjct: 481 LSSLADYLALLGHTVHEDRVNASIGLENINGHAIDFWNICENDESCTGDVCEVRALSSSH 540
Query: 541 XXXXXXXXXIFVECSQCGRTXXXXXXXXXXXFLLLNNTYRDLKIYGGSQGGGYSALADNF 600
IFVECSQCGRT FLLLNNTYRDLKIYGGSQGGGYSALADNF
Sbjct: 541 ASATSENSSIFVECSQCGRTACKACCAGKGAFLLLNNTYRDLKIYGGSQGGGYSALADNF 600
Query: 601 VCKSCCSEVIKHALYVDYVRVLRSLRKKGRTEQAVLKAVNQVCGLEFSRISDFTKSVQYG 660
VCKSCCSEVIKHALYVDYVRVLRSLRKKGRTEQAVLKAVNQVCGLEFSRISDFTKSVQYG
Sbjct: 601 VCKSCCSEVIKHALYVDYVRVLRSLRKKGRTEQAVLKAVNQVCGLEFSRISDFTKSVQYG 660
Query: 661 QKQLKQLLDGEESLAEFPYASFLQTVETSDDSEPLLSLLAPFGIGEQKSYWKAPLDNTSV 720
QKQLKQLLDGEESLAEFPYASFLQTVETSDDSEPLLSLLAPFGIGEQKSYWKAPLDNTSV
Sbjct: 661 QKQLKQLLDGEESLAEFPYASFLQTVETSDDSEPLLSLLAPFGIGEQKSYWKAPLDNTSV 720
Query: 721 EFSIVLGGLSDVSGAAIIVGSCGYSTSDCPIVEIWAGNKINREDRTFIGKWDVHDMMLSS 780
EFSIVLGGLSDVSGAAIIVGSCGYSTSDCPIVEIWAGNKINREDRTFIGKWDVHDMMLSS
Sbjct: 721 EFSIVLGGLSDVSGAAIIVGSCGYSTSDCPIVEIWAGNKINREDRTFIGKWDVHDMMLSS 780
Query: 781 PHLSGPEKTSSMSEEPRHIKFHFPNPIRCRIVSIKMTLNHIDSHSTKFREEFDLLSLSEG 840
PHLSGPEKTSSMSEEPRHIKFHFPNPIRCRIVSIKMTLNHIDSHSTKFREEFDLLSLSEG
Sbjct: 781 PHLSGPEKTSSMSEEPRHIKFHFPNPIRCRIVSIKMTLNHIDSHSTKFREEFDLLSLSEG 840
Query: 841 TFSESKPTTPQNSFIHAKRIVIFGNTLRKETNPDTSMGIMRMKTYLDRSQPLGRFRIPVE 900
TFSESKPTTPQNSFIHAKRIVIFGNTLRKETNPDTSMGIMRMKTYLDRSQPLGRFRIPVE
Sbjct: 841 TFSESKPTTPQNSFIHAKRIVIFGNTLRKETNPDTSMGIMRMKTYLDRSQPLGRFRIPVE 900
Query: 901 AERLRDNDLVLEQYLLPNTPGIAGFRLDFFNVVRLRVTHSPSSSELDMKEFSLIPMEDRV 960
AERLRDNDLVLEQYLLPNTPGIAGFRLDFFNVVRLRVTHSPSSSELDMKEFSLIPMEDRV
Sbjct: 901 AERLRDNDLVLEQYLLPNTPGIAGFRLDFFNVVRLRVTHSPSSSELDMKEFSLIPMEDRV 960
Query: 961 INPAILYLQVTIVKESGKLVVEEYRLPEVKVNTPLYYDFQDLQQDVRCVLFRLLGDVTAF 1020
INPAILYLQVTIVKESGKLVVEEYRLPEVKVNTPLYYDFQDLQQDVRCVLFRLLGDVTAF
Sbjct: 961 INPAILYLQVTIVKESGKLVVEEYRLPEVKVNTPLYYDFQDLQQDVRCVLFRLLGDVTAF 1020
Query: 1021 VDDIAEIDGSNLRNLPLATGLSLSNKIKLYYYADTYEMGKIGSLSAV 1067
VDDIAEIDGSNLRNLPLATGLSLSNKIKLYYYADTYEMGKIGSLSAV
Sbjct: 1021 VDDIAEIDGSNLRNLPLATGLSLSNKIKLYYYADTYEMGKIGSLSAV 1067
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 33,078,922
Number of extensions: 1363394
Number of successful extensions: 2845
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2844
Number of HSP's successfully gapped: 1
Length of query: 1067
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 956
Effective length of database: 11,240,047
Effective search space: 10745484932
Effective search space used: 10745484932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)