BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0347300 Os01g0347300|J065129D14
(376 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0347300 Conserved hypothetical protein 684 0.0
Os01g0345900 219 2e-57
Os01g0346501 Conserved hypothetical protein 111 9e-25
>Os01g0347300 Conserved hypothetical protein
Length = 376
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/376 (92%), Positives = 348/376 (92%)
Query: 1 MDCKDSLKNRIRIFTEAVVVMVCPVLLSFALKKVDLTANRSKQIVDSISPIGALTLEAGI 60
MDCKDSLKNRIRIFTEAVVVMVCPVLLSFALKKVDLTANRSKQIVDSISPIGALTLEAGI
Sbjct: 1 MDCKDSLKNRIRIFTEAVVVMVCPVLLSFALKKVDLTANRSKQIVDSISPIGALTLEAGI 60
Query: 61 LPFLGLCLSTVLGERLAWLVLASKLLIHLCXXXXXXXXXXXXXXXSKSNIVCLSIWIPFV 120
LPFLGLCLSTVLGERLAWLVLASKLLIHLC SKSNIVCLSIWIPFV
Sbjct: 61 LPFLGLCLSTVLGERLAWLVLASKLLIHLCVILLMALAFVILLLISKSNIVCLSIWIPFV 120
Query: 121 PFILWLGYNSVKDEEHENADDATKSAHHGKLEISVDFSASITSXXXXXXXXXXXXXQASA 180
PFILWLGYNSVKDEEHENADDATKSAHHGKLEISVDFSASITS QASA
Sbjct: 121 PFILWLGYNSVKDEEHENADDATKSAHHGKLEISVDFSASITSLLFLGLKGLALEGQASA 180
Query: 181 IKGLDAHLSDSLIVSFVTCVLGVVFMLVGTAPPVYGMGRLVDSLRILDTSLAIAFGVIVV 240
IKGLDAHLSDSLIVSFVTCVLGVVFMLVGTAPPVYGMGRLVDSLRILDTSLAIAFGVIVV
Sbjct: 181 IKGLDAHLSDSLIVSFVTCVLGVVFMLVGTAPPVYGMGRLVDSLRILDTSLAIAFGVIVV 240
Query: 241 LITIAPLKEAAWLVSIPWILSFFVWLFIRLFDHDEGEDRDVKPVSLELTKAAFTGFLAVS 300
LITIAPLKEAAWLVSIPWILSFFVWLFIRLFDHDEGEDRDVKPVSLELTKAAFTGFLAVS
Sbjct: 241 LITIAPLKEAAWLVSIPWILSFFVWLFIRLFDHDEGEDRDVKPVSLELTKAAFTGFLAVS 300
Query: 301 IPSFSNSSTSGGYTHAFIVLTGSAVLAGLAWRLITHVKKPSRAMVWAENVASSCAHICVA 360
IPSFSNSSTSGGYTHAFIVLTGSAVLAGLAWRLITHVKKPSRAMVWAENVASSCAHICVA
Sbjct: 301 IPSFSNSSTSGGYTHAFIVLTGSAVLAGLAWRLITHVKKPSRAMVWAENVASSCAHICVA 360
Query: 361 AAVVPFASISMTVLRS 376
AAVVPFASISMTVLRS
Sbjct: 361 AAVVPFASISMTVLRS 376
>Os01g0345900
Length = 432
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 157/394 (39%), Positives = 229/394 (58%), Gaps = 28/394 (7%)
Query: 5 DSLKNRIRIFTEAVVVMVCPVLLSFALKKVDLTANRSKQIVDS-ISPIGALTLEAGILPF 63
D+++ R++ FTE VV+MVCPVLL+ +LKK DL +N + +V ISP+ A+TLEAG+L
Sbjct: 37 DTMRKRVQAFTEGVVLMVCPVLLAVSLKKADLKSNGNGSLVGGGISPLAAITLEAGLLAV 96
Query: 64 LGLCLSTVLGERLAWLVLASKLLIHLCXXXXXXXXXXXXXXXS-KSNIVCLS--IWIPFV 120
L L ++ L L+ ASKLL+HLC ++ CL+ + P V
Sbjct: 97 LFLGINDSLPASHGLLLRASKLLVHLCALLLMALAFVILLLIDMDRHMYCLAGLVLAPLV 156
Query: 121 PFILWLGYNSVKDEEHENADDATKSAHHGKLEISVDFSASITSXXXXXXXXXXXXXQASA 180
P L+ Y +D ++A +A LE SV+FSA++T+ Q+SA
Sbjct: 157 PLTLFRCYRGARDGGDDHAAGGGDAAA--TLEDSVNFSAAVTTLLFLGLEGLALEGQSSA 214
Query: 181 -IKGLDAHLSDSLIVSFVTCVLGVVFMLVGTAP-PVYGM--------GRLVDSLRILDTS 230
+G++ + SL V+++TCVLGV MLVGT P P ++ +L+ +
Sbjct: 215 ACRGMERLFTASLGVTYLTCVLGVFVMLVGTVPDPAMASTDDQGDRSAKVCYFAELLNAT 274
Query: 231 LAIAFGVIVVLITIAPLKEAAWLVSIPWILSFFVWLFIRLFDHDEGEDRDVKP-VSLELT 289
L++AF V+VVLIT APL+E AWLV +P ILSF W++ + GE +KP SLELT
Sbjct: 275 LSVAFAVVVVLITAAPLREQAWLVFVPLILSFVTWMYRAIVGDGVGE---IKPAASLELT 331
Query: 290 KAAFTGFLAVSIPSFSNSSTSGGYTHAFIVLTGSAVLAGLAWRLI-------THVKKPSR 342
K FTGFLAV++P+FSN+ G T F+ L+ +AV++ L WRL+ ++ S
Sbjct: 332 KVTFTGFLAVAVPTFSNTPV-GISTRGFVALSAAAVMSDLGWRLLMTGRMDRNDQRRASP 390
Query: 343 AMVWAENVASSCAHICVAAAVVPFASISMTVLRS 376
AMV NVAS CAH+CVAAAV+PFA++++ + S
Sbjct: 391 AMVSVANVASLCAHLCVAAAVLPFATLAVNAVSS 424
>Os01g0346501 Conserved hypothetical protein
Length = 1036
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 133/416 (31%), Positives = 181/416 (43%), Gaps = 62/416 (14%)
Query: 5 DSLKNRIRIFTEAVVVMVCPVLLSFALKKVDLTAN-RSKQIVDSISPIGALTLEAGILPF 63
D+L NR R F EAVV+MVCPVLL+ ALKKVDL + RS+ + + + ALTL G +PF
Sbjct: 636 DALMNRSRAFAEAVVIMVCPVLLAVALKKVDLKSQERSRAVPIFMLVMAALTLAFGTVPF 695
Query: 64 LGLCLSTVLGE---RL-----AWLVLASKL--------LIHLCXXXXXXXXXXXXXXXSK 107
L L LS + RL WL +S +IHL +
Sbjct: 696 LALSLSKRFSDHRWRLPAKATTWLAPSSCACLVGLACWIIHL-----ILSARWAYAFPAM 750
Query: 108 SNIVCLSIWIPFVPFILWLG-------YNSVKDEEHENADDATKSAHHGKLEISVD---- 156
+ L I I V + G V E D + A +E +D
Sbjct: 751 GTVFGLCIVIHSVRYCRAGGDLANLVHPGDVLHTTDELTDRKRREALQKAMEGKLDESLE 810
Query: 157 FSASITSXXXXXXXXXXXXXQASAIKGLDAHLSDSLIVSFVTCVLGVVFMLVGTAPPVYG 216
F A +T+ Q + +G L+ + + F C+ G F+LV T PP
Sbjct: 811 FLAGVTALLFLGLEGLALEGQINGGQG---RLAAPMGLCFFACLFGACFVLVQTIPPSPP 867
Query: 217 MGRLVDSLR---------ILDTSLAIAFGVIVVLITIAPLKEAAWLVSIPWILSFFVWLF 267
SLR I +A A V++ I + +K A ++ P L V F
Sbjct: 868 PSATDTSLRANIVRNLPAICGMFMACAIAVVMFSIMVVLVKLLALMLLSPLFLILLVHAF 927
Query: 268 IRLFD-----HDEGEDRDVKPVSLELTKAAFTGFLAVSIPSFSNSSTSGG----YTHAFI 318
+F GED VKP SLEL+K AFTGFL V+I S +TS G T F+
Sbjct: 928 DLVFPGGGGGGGGGEDDVVKPASLELSKVAFTGFLTVAI---SARTTSRGPLSTSTQWFL 984
Query: 319 VLTGSAVLAGLAWRLITHVKKPSRAMVWAENVASSCAHICVAAAVVPFASISMTVL 374
+ SA+++G AWRL+T K A NVAS C H+C+ A VPF ++ L
Sbjct: 985 IFAASAIVSGFAWRLLTQAKVGKSA-----NVASFCTHLCIVLATVPFTVMAGQAL 1035
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,955,630
Number of extensions: 387653
Number of successful extensions: 1331
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1320
Number of HSP's successfully gapped: 4
Length of query: 376
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 274
Effective length of database: 11,709,973
Effective search space: 3208532602
Effective search space used: 3208532602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)