Os01g0347300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0347300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.2 | 0.593 | 4.66 | -0.012 | 1.45 | -0.726 | 0.631 | 1.2 | -0.749 | 8.35 | 20.5 | 706 | -- | -- |
| 163 | 0.595 | 4.71 | -0.232 | 1.44 | -0.808 | 0.422 | -- | -0.827 | 8.22 | 20.58 | 791 | -- | -- |
| 160.35 | 0.59 | 4.66 | -0.00266 | 1.44 | -0.744 | -- | 1.05 | -0.74 | 8.33 | 20.51 | 705 | -- | -- |
| 162.87 | 0.594 | 4.69 | -0.199 | 1.44 | -0.861 | -- | -- | -0.787 | 8.24 | 20.5 | 810 | -- | -- |
| 259.2 | 0.75 | 4.71 | -0.0205 | -- | -0.989 | -- | 0.712 | -0.619 | -- | 25.6 | 565 | -- | -- |
| 183.96 | 0.636 | 4.73 | -0.538 | 1.55 | -- | 0.265 | -- | -0.985 | 8.45 | -- | -- | -- | -- |
| 184.18 | 0.636 | 4.73 | -0.53 | 1.55 | -- | -- | -- | -0.985 | 8.45 | -- | -- | -- | -- |
| 258.7 | 0.749 | 4.68 | -0.212 | -- | -1.09 | -- | -- | -0.561 | -- | 25.25 | 589 | -- | -- |
| 163.77 | 0.596 | 4.69 | -- | 1.46 | -0.942 | -- | -- | -0.755 | 8.22 | 20.53 | 926 | -- | -- |
| 318.57 | 0.834 | 4.78 | -0.522 | -- | -- | -- | -- | -0.969 | -- | -- | -- | -- | -- |
| 191.58 | 0.647 | 4.72 | -- | 1.55 | -- | -- | -- | -0.926 | 8.48 | -- | -- | -- | -- |
| 259.75 | 0.751 | 4.68 | -- | -- | -1.11 | -- | -- | -0.526 | -- | 25.2 | 590 | -- | -- |
| 325.76 | 0.842 | 4.76 | -- | -- | -- | -- | -- | -0.911 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.57 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 10 |
| 10 | 156.48 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 8 |
| 14 | 156.94 | temperature | 20 | 720 | < th | dose independent | sin | 11 | NA |
| 16 | 157.11 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 17 | 157.23 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 3 |
| 26 | 157.47 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 47 | 158.17 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 77 | 158.82 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 14 |
| 82 | 158.88 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 83 | 158.92 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 86 | 158.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 91 | 158.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 92 | 158.98 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 94 | 159.01 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 97 | 159.03 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 117 | 159.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 193 | 159.91 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |
| 264 | 160.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 10 |
| 268 | 160.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 274 | 160.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 290 | 160.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 328 | 160.61 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 405 | 160.89 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 1 |
| 422 | 160.92 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 498 | 161.22 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 561 | 161.43 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 604 | 161.57 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 633 | 161.70 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 726 | 162.06 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 23 |
| 812 | 162.32 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 960 | 162.74 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 966 | 162.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |