BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0347100 Os01g0347100|AK100716
         (495 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0347100  Protein of unknown function DUF1399 family pro...   971   0.0  
AK065933                                                           89   1e-17

>Os01g0347100 Protein of unknown function DUF1399 family protein
          Length = 495

 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/495 (95%), Positives = 472/495 (95%)

Query: 1   MSGPGGREREAAGPAFSFSVDLVXXXXXXXXXXXSXXXXXXXXXXXXPRSVRRYEELWMP 60
           MSGPGGREREAAGPAFSFSVDLV           S            PRSVRRYEELWMP
Sbjct: 1   MSGPGGREREAAGPAFSFSVDLVAAARRLLALLRSGDGERGGAGVVGPRSVRRYEELWMP 60

Query: 61  LVAAEGAGGEAPMLVPPPDVRLVWLCHCFHHESYAAYCASRFGRLINRPSILDADNEEYA 120
           LVAAEGAGGEAPMLVPPPDVRLVWLCHCFHHESYAAYCASRFGRLINRPSILDADNEEYA
Sbjct: 61  LVAAEGAGGEAPMLVPPPDVRLVWLCHCFHHESYAAYCASRFGRLINRPSILDADNEEYA 120

Query: 121 ADHCRDVWAAHYPSEPFDLEDNETEGNSSNDKSASEIIEMVQRYTGLAARFASPFISEGV 180
           ADHCRDVWAAHYPSEPFDLEDNETEGNSSNDKSASEIIEMVQRYTGLAARFASPFISEGV
Sbjct: 121 ADHCRDVWAAHYPSEPFDLEDNETEGNSSNDKSASEIIEMVQRYTGLAARFASPFISEGV 180

Query: 181 YHVAARRRYMRFLELIKKIVSTTQGNTRLVPSLDILLMWLAHQSFPVSYYADMAAMAVKD 240
           YHVAARRRYMRFLELIKKIVSTTQGNTRLVPSLDILLMWLAHQSFPVSYYADMAAMAVKD
Sbjct: 181 YHVAARRRYMRFLELIKKIVSTTQGNTRLVPSLDILLMWLAHQSFPVSYYADMAAMAVKD 240

Query: 241 NVAKIVVGYGEVVSEEMVERTRVLWEEAYDEPYDMAGSEIDKAEVDAAREAFYWETAASE 300
           NVAKIVVGYGEVVSEEMVERTRVLWEEAYDEPYDMAGSEIDKAEVDAAREAFYWETAASE
Sbjct: 241 NVAKIVVGYGEVVSEEMVERTRVLWEEAYDEPYDMAGSEIDKAEVDAAREAFYWETAASE 300

Query: 301 EDANRLYKGLQPRFIMEVYVFLKGEFDSEHTSKEFLRLRTQRCYRSLKLNIPLFNLSCKN 360
           EDANRLYKGLQPRFIMEVYVFLKGEFDSEHTSKEFLRLRTQRCYRSLKLNIPLFNLSCKN
Sbjct: 301 EDANRLYKGLQPRFIMEVYVFLKGEFDSEHTSKEFLRLRTQRCYRSLKLNIPLFNLSCKN 360

Query: 361 WQKTWHLYCEFSTRGLIIEVRRSTSGCFRNSKLIKNISFSWSDMLHEKSLMLTEELDVRM 420
           WQKTWHLYCEFSTRGLIIEVRRSTSGCFRNSKLIKNISFSWSDMLHEKSLMLTEELDVRM
Sbjct: 361 WQKTWHLYCEFSTRGLIIEVRRSTSGCFRNSKLIKNISFSWSDMLHEKSLMLTEELDVRM 420

Query: 421 KAMASITPPVQAPYLLKCVPDRVTDDGGAMISDVILRTKGYRPQEGRWLTRTVLDHSRKE 480
           KAMASITPPVQAPYLLKCVPDRVTDDGGAMISDVILRTKGYRPQEGRWLTRTVLDHSRKE
Sbjct: 421 KAMASITPPVQAPYLLKCVPDRVTDDGGAMISDVILRTKGYRPQEGRWLTRTVLDHSRKE 480

Query: 481 CFVIRIRQRDLAERC 495
           CFVIRIRQRDLAERC
Sbjct: 481 CFVIRIRQRDLAERC 495



>AK065933 
          Length = 566

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 15/198 (7%)

Query: 49  RSVRRYEELWMPLVA--AEGAGGEAPMLVPPPDVRLVWLCHCFHHESYAAYCASRFGRLI 106
           R++ RY+  W+PL++   + A  + P++VP  D   +W CH  +   Y   C   +GR++
Sbjct: 49  RAIHRYKSCWLPLLSKHTQAAVVDGPLVVPL-DCEWIWHCHRLNPVQYLKDCKRLYGRIL 107

Query: 107 NRPSILDADNEEYAADHCRDVWAAHYPSEPFDLEDNETEGNS--SNDKSASEI----IEM 160
           +  ++  +   E +      VWA  YP EPF+LE   +  NS  +N  +A +I    +  
Sbjct: 108 DNSNVQSSIRAE-SKHQSEKVWAEQYPKEPFELEYTSSSDNSIYANAGAAEDISYDLVAA 166

Query: 161 VQRYTGLAARFASPFISEGVYHVAARRRYMRFLELIKKIVSTTQGNTRL--VPSLDILLM 218
           V+R +    +  +P + +  +   A  RY  FL LIK   +  +   +L  VP+ D+ ++
Sbjct: 167 VKRQSSFFYQVDTPTMHDQRFLEEALARYKGFLYLIK---TNQENKMKLFRVPTYDVDVI 223

Query: 219 WLAHQSFPVSYYADMAAM 236
           W  HQ  P +Y  DM  +
Sbjct: 224 WHTHQLHPATYCHDMLKL 241



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,136,998
Number of extensions: 696523
Number of successful extensions: 1583
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1577
Number of HSP's successfully gapped: 2
Length of query: 495
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 390
Effective length of database: 11,553,331
Effective search space: 4505799090
Effective search space used: 4505799090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)