BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0346600 Os01g0346600|AK105649
         (247 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0346600  Conserved hypothetical protein                      283   1e-76

>Os01g0346600 Conserved hypothetical protein
          Length = 247

 Score =  283 bits (723), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/247 (62%), Positives = 154/247 (62%)

Query: 1   MVVVPYWVLCAMGQFHGGDSFAVSQFLLFLGSTLGALALMAARXXXXXXXXXXXXXXXXX 60
           MVVVPYWVLCAMGQFHGGDSFAVSQFLLFLGSTLGALALMAAR                 
Sbjct: 1   MVVVPYWVLCAMGQFHGGDSFAVSQFLLFLGSTLGALALMAARLSQLAGAAPGLAPASEL 60

Query: 61  XRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFWFTLHLDGESSPAATIDGIKS 120
            RR                                   FWFTLHLDGESSPAATIDGIKS
Sbjct: 61  LRRATLVVMLVTAHAAAAELLGEATIALLCLPELAPALFWFTLHLDGESSPAATIDGIKS 120

Query: 121 HRNXXXXXXXXXXXXXXXXXXXMGERGLSVSTITMVSCGVSGLLVRCAVVVLGQWPGQAE 180
           HRN                   MGERGLSVSTITMVSCGVSGLLVRCAVVVLGQWPGQAE
Sbjct: 121 HRNVLSVLAAAAVASVAYLAAAMGERGLSVSTITMVSCGVSGLLVRCAVVVLGQWPGQAE 180

Query: 181 TAGSTAASLMEVVLVLKFWGNTXXXXXXXXXXXXXXXXXXXXXQEPMFATVAKCFSDYID 240
           TAGSTAASLMEVVLVLKFWGNT                     QEPMFATVAKCFSDYID
Sbjct: 181 TAGSTAASLMEVVLVLKFWGNTLLAVAAMLLLLALLTAFRLCLQEPMFATVAKCFSDYID 240

Query: 241 KVPQMIV 247
           KVPQMIV
Sbjct: 241 KVPQMIV 247



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,634,399
Number of extensions: 98647
Number of successful extensions: 257
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 2
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)