BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0338600 Os01g0338600|AK066580
         (283 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0338600  Conserved hypothetical protein                      537   e-153

>Os01g0338600 Conserved hypothetical protein
          Length = 283

 Score =  537 bits (1384), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 265/283 (93%), Positives = 265/283 (93%)

Query: 1   MVVVTAAAPPLGIALVGPTRARRXXXXXXXXXXXXXXXXXXRGVLRGGCARMREPLPPAP 60
           MVVVTAAAPPLGIALVGPTRARR                  RGVLRGGCARMREPLPPAP
Sbjct: 1   MVVVTAAAPPLGIALVGPTRARRGGGLSLSSSSCCYLSMCGRGVLRGGCARMREPLPPAP 60

Query: 61  IGLDRFLCGYMRRDGHEDGERSQGIEDSLMFGPDDDNGSNIPTQVETLVRGTATVATPEY 120
           IGLDRFLCGYMRRDGHEDGERSQGIEDSLMFGPDDDNGSNIPTQVETLVRGTATVATPEY
Sbjct: 61  IGLDRFLCGYMRRDGHEDGERSQGIEDSLMFGPDDDNGSNIPTQVETLVRGTATVATPEY 120

Query: 121 KSIPDLDYLQELLAIQQQGPRAIGFFGTRNMGFMHQQLIEILSYAMVITKNHIFTSGASG 180
           KSIPDLDYLQELLAIQQQGPRAIGFFGTRNMGFMHQQLIEILSYAMVITKNHIFTSGASG
Sbjct: 121 KSIPDLDYLQELLAIQQQGPRAIGFFGTRNMGFMHQQLIEILSYAMVITKNHIFTSGASG 180

Query: 181 TNAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLSKVQNLIEKPQYDHLPLIEASRL 240
           TNAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLSKVQNLIEKPQYDHLPLIEASRL
Sbjct: 181 TNAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLSKVQNLIEKPQYDHLPLIEASRL 240

Query: 241 CNMDIISKVQQVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 283
           CNMDIISKVQQVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD
Sbjct: 241 CNMDIISKVQQVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 283



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,275,886
Number of extensions: 380844
Number of successful extensions: 1099
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1098
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 183
Effective length of database: 11,814,401
Effective search space: 2162035383
Effective search space used: 2162035383
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)