BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0327000 Os01g0327000|J075176J07
         (425 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0327000  Conserved hypothetical protein                      230   1e-60

>Os01g0327000 Conserved hypothetical protein
          Length = 425

 Score =  230 bits (587), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/188 (69%), Positives = 130/188 (69%)

Query: 238 TYIDRSPATATATSRPLTISPLTYGSHGGGRCVRSCAGGHGAEPGVRGAAEGAVPXXXXX 297
           TYIDRSPATATATSRPLTISPLTYGSHGGGRCVRSCAGGHGAEPGVRGAAEGAVP     
Sbjct: 238 TYIDRSPATATATSRPLTISPLTYGSHGGGRCVRSCAGGHGAEPGVRGAAEGAVPVERVG 297

Query: 298 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERDAGRVGEQLRGERDAVEGEVR 357
                                                ERDAGRVGEQLRGERDAVEGEVR
Sbjct: 298 DGDDGDRREHAGDAGQQLLQAAAAQPGALLLRQPAAGERDAGRVGEQLRGERDAVEGEVR 357

Query: 358 RRHGQDGEHRGAHXXXXXXXXXXXXXXXXVILLRRRDGDVVPLLLRIHHVRRRGRVELID 417
           RRHGQDGEHRGAH                VILLRRRDGDVVPLLLRIHHVRRRGRVELID
Sbjct: 358 RRHGQDGEHRGAHRQPGRGQAQLQRRQQPVILLRRRDGDVVPLLLRIHHVRRRGRVELID 417

Query: 418 DDVQPVWC 425
           DDVQPVWC
Sbjct: 418 DDVQPVWC 425




 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 64/126 (50%)

Query: 1   VVSHSHHSTSLPVRACLAKRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQHQLPQ 60
           VVSHSHHSTSLPVRACLAKRY                                LQHQLPQ
Sbjct: 1   VVSHSHHSTSLPVRACLAKRYGRSACGGRGGRRSGRVPAAAAGGEPRPAAGGVLQHQLPQ 60

Query: 61  CRDAGPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAADVAQQHGGARRGAEQPQP 120
           CRDAGPAG                              VGAADVAQQHGGARRGAEQPQP
Sbjct: 61  CRDAGPAGRHQRLRQRLRHRRRPHPPPFPRLLRQRLRRVGAADVAQQHGGARRGAEQPQP 120

Query: 121 PWLPGD 126
           PWLPGD
Sbjct: 121 PWLPGD 126



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,501,980
Number of extensions: 251058
Number of successful extensions: 1256
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1253
Number of HSP's successfully gapped: 3
Length of query: 425
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 321
Effective length of database: 11,605,545
Effective search space: 3725379945
Effective search space used: 3725379945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)