Os01g0327000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0327000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.79 | 0.639 | 3.11 | 0.993 | 0.569 | 1.62 | 1.22 | 1.49 | 0.503 | 0.74 | 24.11 | 4655 | -- | -- |
| 185.98 | 0.635 | 3.07 | 1.16 | 0.581 | 1.3 | 1.28 | -- | 0.492 | 0.867 | 32.87 | 5739 | -- | -- |
| 190.89 | 0.643 | 3.11 | 0.947 | 0.567 | 1.61 | -- | 1.48 | 0.502 | 0.307 | 24.05 | 4640 | -- | -- |
| 192.53 | 0.646 | 3.06 | 1.21 | 0.569 | 1.41 | -- | -- | 0.558 | 0.292 | 25.5 | 5969 | -- | -- |
| 207.29 | 0.674 | 3.12 | 0.517 | -- | 1.43 | -- | 2.01 | 0.356 | -- | 24.05 | 4640 | -- | -- |
| 214.27 | 0.686 | 3.14 | 0.532 | 0.546 | -- | 1.2 | -- | 0.209 | 0.728 | -- | -- | -- | -- |
| 220.13 | 0.695 | 3.14 | 0.489 | 0.545 | -- | -- | -- | 0.204 | 0.201 | -- | -- | -- | -- |
| 212.76 | 0.679 | 3.05 | 1.21 | -- | 1.38 | -- | -- | 0.558 | -- | 25.1 | 5973 | -- | -- |
| 212.08 | 0.678 | 3.13 | -- | 0.635 | 0.815 | -- | -- | 0.278 | 0.00752 | 56.16 | 2178 | -- | -- |
| 238.85 | 0.722 | 3.13 | 0.506 | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
| 226.42 | 0.704 | 3.16 | -- | 0.552 | -- | -- | -- | 0.15 | 0.249 | -- | -- | -- | -- |
| 226.97 | 0.704 | 3.12 | -- | -- | 1.1 | -- | -- | 0.281 | -- | 56.16 | 2178 | -- | -- |
| 245.62 | 0.732 | 3.14 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 2 | 184.02 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 6 | 184.15 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 13 | 184.30 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 14 | 184.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 16 | 184.34 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 19 | 184.40 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 22 |
| 32 | 184.56 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 22 |
| 37 | 184.68 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 49 | 184.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 60 | 184.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 61 | 184.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 17 |
| 76 | 184.76 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 85 | 184.82 | wind | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 86 | 184.82 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 90 | 184.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 92 | 184.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 99 | 184.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 122 | 184.92 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 138 | 184.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 149 | 184.99 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 199 | 185.00 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 201 | 185.01 | radiation | 1 | 14400 | > th | dose independent | sin | 13 | NA |
| 202 | 185.02 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 219 | 185.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 245 | 185.08 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 257 | 185.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 258 | 185.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 271 | 185.10 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 277 | 185.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 325 | 185.15 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 346 | 185.17 | radiation | 1 | 14400 | > th | dose independent | sin | 1 | NA |
| 370 | 185.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 375 | 185.24 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 23 |
| 378 | 185.25 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 379 | 185.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 383 | 185.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 409 | 185.28 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 410 | 185.28 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 413 | 185.28 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 436 | 185.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 462 | 185.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 484 | 185.35 | radiation | 1 | 43200 | < th | dose independent | sin | 16 | NA |
| 487 | 185.35 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 8 |
| 506 | 185.36 | radiation | 1 | 14400 | < th | dose independent | sin | 3 | NA |
| 509 | 185.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 617 | 185.45 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 619 | 185.46 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 629 | 185.46 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 18 |
| 696 | 185.48 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 731 | 185.53 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 732 | 185.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 738 | 185.55 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 739 | 185.56 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 781 | 185.60 | wind | 7 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 790 | 185.63 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 791 | 185.63 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 810 | 185.66 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 820 | 185.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 830 | 185.69 | temperature | 25 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 832 | 185.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 835 | 185.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 879 | 185.74 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 19 |
| 895 | 185.76 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 925 | 185.80 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 927 | 185.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 928 | 185.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 936 | 185.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 950 | 185.80 | temperature | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 959 | 185.81 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 9 |