BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0321700 Os01g0321700|AK070488
(865 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0321700 Zinc finger, Sec23/Sec24-type domain containin... 1514 0.0
Os08g0474700 Similar to COPII subunit Sec23 (Fragment) 118 2e-26
>Os01g0321700 Zinc finger, Sec23/Sec24-type domain containing protein
Length = 865
Score = 1514 bits (3919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/812 (91%), Positives = 745/812 (91%)
Query: 54 FSTPPGPPVFSSPLRPAAVPFRATPASPQPVPFXXXXXXXXXXXXXXXXXXXXXXXPHFL 113
FSTPPGPPVFSSPLRPAAVPFRATPASPQPVPF PHFL
Sbjct: 54 FSTPPGPPVFSSPLRPAAVPFRATPASPQPVPFASRGGGYSSSSSSAAVSLPTSSGPHFL 113
Query: 114 NGVATPTSHLXXXXXXXXXXXXXXXXXXXYVLFSAHKVLKQKKLLNAPSLGFGALVSPGR 173
NGVATPTSHL YVLFSAHKVLKQKKLLNAPSLGFGALVSPGR
Sbjct: 114 NGVATPTSHLPSSAAAPPPPPPPPPEESPYVLFSAHKVLKQKKLLNAPSLGFGALVSPGR 173
Query: 174 EVAPGPETVERDPRRCLNCGAYVNLYCDVLIGSGQWQCVICKKMNGSEGEFVVSSKHDLL 233
EVAPGPETVERDPRRCLNCGAYVNLYCDVLIGSGQWQCVICKKMNGSEGEFVVSSKHDLL
Sbjct: 174 EVAPGPETVERDPRRCLNCGAYVNLYCDVLIGSGQWQCVICKKMNGSEGEFVVSSKHDLL 233
Query: 234 QWPELASSAIDYVQSGNRRPSFVPVPDTRVSGPIFILIDECLDEAHLQHLQGSLHAFVDT 293
QWPELASSAIDYVQSGNRRPSFVPVPDTRVSGPIFILIDECLDEAHLQHLQGSLHAFVDT
Sbjct: 234 QWPELASSAIDYVQSGNRRPSFVPVPDTRVSGPIFILIDECLDEAHLQHLQGSLHAFVDT 293
Query: 294 LPPTARIGIISYGRTVSVYDFSEGAAVSADVLPGNKSPTHESLKAIIYGTGIYLSPVHAS 353
LPPTARIGIISYGRTVSVYDFSEGAAVSADVLPGNKSPTHESLKAIIYGTGIYLSPVHAS
Sbjct: 294 LPPTARIGIISYGRTVSVYDFSEGAAVSADVLPGNKSPTHESLKAIIYGTGIYLSPVHAS 353
Query: 354 LPVAHTIFSSLRPYQLSLPEVSRDRCIGAAVEVALGIIQGPAAEVSRGIIKRSGGNYRIL 413
LPVAHTIFSSLRPYQLSLPEVSRDRCIGAAVEVALGIIQGPAAEVSRGIIKRSGGNYRIL
Sbjct: 354 LPVAHTIFSSLRPYQLSLPEVSRDRCIGAAVEVALGIIQGPAAEVSRGIIKRSGGNYRIL 413
Query: 414 VCAGGPSTFGPGSVPHSVQHPNYAYLEKTAMKWMERLGHEAQRHSTVVDILCAGTCPVRV 473
VCAGGPSTFGPGSVPHSVQHPNYAYLEKTAMKWMERLGHEAQRHSTVVDILCAGTCPVRV
Sbjct: 414 VCAGGPSTFGPGSVPHSVQHPNYAYLEKTAMKWMERLGHEAQRHSTVVDILCAGTCPVRV 473
Query: 474 PVLQPLAKCSGGVLLLHDDFGEAFGVNLQRASTRAAGSHGLFEIRCSDDMLVTQVIGPGE 533
PVLQPLAKCSGGVLLLHDDFGEAFGVNLQRASTRAAGSHGLFEIRCSDDMLVTQVIGPGE
Sbjct: 474 PVLQPLAKCSGGVLLLHDDFGEAFGVNLQRASTRAAGSHGLFEIRCSDDMLVTQVIGPGE 533
Query: 534 EASPDSHETFKHDTSFCIQMHSVEETQSFSVSMESKGDIKNDFVYFQFAVHYSNMYQTEI 593
EASPDSHETFKHDTSFCIQMHSVEETQSFSVSMESKGDIKNDFVYFQFAVHYSNMYQTEI
Sbjct: 534 EASPDSHETFKHDTSFCIQMHSVEETQSFSVSMESKGDIKNDFVYFQFAVHYSNMYQTEI 593
Query: 594 TRVITMRLQTVDGLSAYLASVQDDVASVIIGKRTVLRARTASDAIDMRLTIDERVKDLAL 653
TRVITMRLQTVDGLSAYLASVQDDVASVIIGKRTVLRARTASDAIDMRLTIDERVKDLAL
Sbjct: 594 TRVITMRLQTVDGLSAYLASVQDDVASVIIGKRTVLRARTASDAIDMRLTIDERVKDLAL 653
Query: 654 KFGTQVPKSKLYRFPKELASLPGCLFHLRRGPLLGSIVGHEDERSVLRNLFLNASFDLSF 713
KFGTQVPKSKLYRFPKELASLPGCLFHLRRGPLLGSIVGHEDERSVLRNLFLNASFDLSF
Sbjct: 654 KFGTQVPKSKLYRFPKELASLPGCLFHLRRGPLLGSIVGHEDERSVLRNLFLNASFDLSF 713
Query: 714 RMLAPRCIMHREGGTFEELPAYDLAMQSNAAVVLDHGTDIFIWLXXXXXXXXXXXXXXXX 773
RMLAPRCIMHREGGTFEELPAYDLAMQSNAAVVLDHGTDIFIWL
Sbjct: 714 RMLAPRCIMHREGGTFEELPAYDLAMQSNAAVVLDHGTDIFIWLGAELAAQEGQSAAALA 773
Query: 774 XXXXXXXXXSELRFPAPRILSFKEGSSQARYFVSRLIPAHKDPTYEQESRFPQLRTLTPE 833
SELRFPAPRILSFKEGSSQARYFVSRLIPAHKDPTYEQESRFPQLRTLTPE
Sbjct: 774 ACRTLAEELSELRFPAPRILSFKEGSSQARYFVSRLIPAHKDPTYEQESRFPQLRTLTPE 833
Query: 834 QRSRLKSSFIHFDDHSFCEWMRSLKLVPPEPS 865
QRSRLKSSFIHFDDHSFCEWMRSLKLVPPEPS
Sbjct: 834 QRSRLKSSFIHFDDHSFCEWMRSLKLVPPEPS 865
>Os08g0474700 Similar to COPII subunit Sec23 (Fragment)
Length = 763
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 154/705 (21%), Positives = 275/705 (39%), Gaps = 109/705 (15%)
Query: 186 PRRCLNCGAYVNLYCDVLIGSGQWQCVICKKMNGSEGEFVVSSKHDLLQWPELASSAIDY 245
P RC C + +N +C V + W C C + N + S+ +L + +++
Sbjct: 54 PLRCRMCRSILNPFCVVDYVAKIWVCPFCFQRNHFPQHYSSISESNLPAELFPQYTTVEF 113
Query: 246 VQSGNRRPSFVPVPDTRVSGPIFILIDECLDEAHLQHLQGSLHAFVDTLPPTARIGIISY 305
+ + V ++D C+ E + +L+ +L ++ LP + +G I++
Sbjct: 114 MSTAET--------GPVVPPVFLFVVDTCMIEEEIDYLKSALAQAIELLPDQSLVGFITF 165
Query: 306 GRTVSVYDFSEGAAVSADVLPGNKSPTHESL--------------KAIIYGT--GI---- 345
G V V++ G + V G K T + + +I G+ G+
Sbjct: 166 GTYVQVHELGFGLLPKSYVFKGTKEVTKDQILEQMCFFAGKTKPTTGVIAGSRDGLSAES 225
Query: 346 ---YLSPVHASLPVAHTIFSSLR--PYQLSLPEVSRDRCIGAAVEVALGIIQGPAAEVSR 400
+L P V ++I L+ P+ +S + + RC G A+ VA ++
Sbjct: 226 ISRFLLPASECEFVLNSIIEELQKDPWPVSADQRA-SRCTGTALSVAASLLG-------- 276
Query: 401 GIIKRSGGNYRILVCAGGPSTFGPGS-VPHSVQHP---------NYAYLEKTAMKWMERL 450
+ G RI+ GGPST GPGS V S+ P A L A+K+ E +
Sbjct: 277 --VCVPGSGARIMAFIGGPSTEGPGSIVSKSLSEPIRSHKDLDKGSAPLYTKAVKFYEEI 334
Query: 451 GHEAQRHSTVVDILCAGTCPVRVPVLQPLAKCSGGVLLLHDDFGEA-FGVNLQRASTRAA 509
+ V+D V V ++ + +GG+++L + FG + F +LQR +
Sbjct: 335 SKQLVHQGHVLDFFACALDQVGVAEMKVAVERTGGIVVLAESFGHSVFKESLQRIFQSSD 394
Query: 510 GS-----HGLFEIRCSDDMLVTQVIGPG---EEASPDSHET--------------FKHDT 547
+G+FEI CS D+ + +IGP E+ SP S +T T
Sbjct: 395 NDLGLSFNGIFEINCSKDVKIQGIIGPCTSLEKKSPLSSDTVVGQGSTSAWKMCGLDRKT 454
Query: 548 SFCIQMHSVEETQSFSVSMESKGDIKNDFVYFQFAVHYSNMYQTEITRVITMRLQTV--- 604
S C+ ++ ++S + N F YFQF +Y + R T+ + V
Sbjct: 455 SICLVFDIAKKDGPDAISQST----SNQF-YFQFLTYYQHHEGQMRLRATTLSRRWVAGS 509
Query: 605 DGLSAYLASVQDDVASVIIGKRTVLRARTASDAIDMRLTIDERVKDLALKFG---TQVPK 661
G+ + + A+ ++ + + +D +R +D + + KFG + P
Sbjct: 510 GGVQDLIDGFDQEAAAAVMARLVSFKMEAEADFDPIRW-LDRALISMCSKFGDYQKETPS 568
Query: 662 SKLYRFPKELASLPGCLFHLRRGPLLGSIVGHEDERSVLRNLFLNASFDLSFRMLAPRCI 721
S + L+ P +F+LRR + DE + R + + + M+ P I
Sbjct: 569 S--FSLSPRLSIFPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVANAVVMIQPSLI 626
Query: 722 MHREGGTFEELP----------AYD--LAMQSNAAVVLDHGTDIFIWLXXXXXXXXXXXX 769
+ +F+ P A D L + S +V+ HG I W
Sbjct: 627 SY----SFQSGPEPVLLDVTAIAADRILLLDSYFTIVIFHGITIAQWRKAGYQDQQGHEA 682
Query: 770 XXXXXXXXXXXXXSEL--RFPAPRILSFKEGSSQARYFVSRLIPA 812
S + RFP PR++ + SQAR+ +++L P+
Sbjct: 683 FAQLLKAPREETDSIIKERFPVPRLVVCDQYGSQARFLLAKLNPS 727
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,191,600
Number of extensions: 1213673
Number of successful extensions: 3884
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3882
Number of HSP's successfully gapped: 2
Length of query: 865
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 756
Effective length of database: 11,344,475
Effective search space: 8576423100
Effective search space used: 8576423100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)