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Os01g0321700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, Sec23/Sec24-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0137) R2 : 0.00321
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0349 (0.0288) R2dN8 : 0.00414 R2N8 : 0.00321
σ : 0.258
deviance : 30.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.98 0.215 10.3 0.724 0.207 -0.43 -0.148 1.58 0.142 11.5 21.4 250 -- --
22.43 0.221 10.3 0.469 0.14 -0.344 -0.299 -- 0.064 8.05 17.04 778 -- --
21.07 0.214 10.3 0.709 0.205 -0.428 -- 1.53 0.141 11.4 21.4 262 -- --
22.52 0.221 10.3 0.418 0.19 -0.317 -- -- 0.0532 10.6 18.44 315 -- --
22.39 0.22 10.3 0.733 -- -0.455 -- 1.42 0.164 -- 20.53 635 -- --
24.14 0.23 10.3 0.357 0.228 -- -0.162 -- 0.00231 8.7 -- -- -- --
24.22 0.23 10.3 0.352 0.228 -- -- -- 0.00249 8.84 -- -- -- --
23.47 0.226 10.3 0.469 -- -0.446 -- -- 0.0775 -- 16.53 690 -- --
26.97 0.242 10.3 -- 0.201 -0.161 -- -- -0.0119 9.55 19.23 304 -- --
27.18 0.244 10.3 0.352 -- -- -- -- 0.00417 -- -- -- -- --
27.48 0.245 10.3 -- 0.229 -- -- -- -0.0367 8.72 -- -- -- --
28.66 0.249 10.3 -- -- -0.256 -- -- 0.00301 -- 20.3 648 -- --
30.44 0.258 10.3 -- -- -- -- -- -0.0349 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.95 temperature 20.0 270 > th dose dependent sin 7 NA
3 20.03 temperature 20.0 720 > th dose dependent rect. 23 5
6 20.07 temperature 20.0 720 > th dose dependent rect. 22 11
9 20.09 temperature 20.0 720 > th dose dependent sin 9 NA
46 20.40 temperature 20.0 720 > th dose dependent rect. 17 17
47 20.41 humidity 90.0 43200 < th dose independent rect. 19 2
48 20.41 wind 1.0 43200 < th dose independent rect. 4 4
53 20.45 wind 1.0 43200 < th dose dependent rect. 21 1
56 20.46 humidity 90.0 43200 > th dose independent rect. 22 1
62 20.47 wind 1.0 43200 > th dose independent rect. 4 4
65 20.48 wind 5.0 43200 < th dose independent rect. 14 1
66 20.48 humidity 90.0 43200 > th dose independent rect. 20 1
69 20.50 humidity 90.0 43200 > th dose independent rect. 20 3
73 20.51 wind 5.0 43200 > th dose independent rect. 14 1
75 20.51 wind 1.0 43200 < th dose dependent rect. 6 2
90 20.56 temperature 25.0 1440 < th dose independent rect. 17 3
91 20.56 wind 3.0 43200 > th dose dependent rect. 14 1
93 20.57 wind 1.0 43200 < th dose independent rect. 7 1
94 20.57 wind 5.0 43200 < th dose independent rect. 14 3
95 20.57 temperature 25.0 1440 > th dose independent rect. 17 3
102 20.58 wind 5.0 43200 < th dose independent rect. 16 1
109 20.59 wind 9.0 43200 < th dose dependent rect. 14 1
110 20.59 wind 3.0 43200 > th dose dependent rect. 14 3
115 20.61 wind 5.0 43200 > th dose independent rect. 14 3
120 20.61 wind 1.0 43200 < th dose dependent rect. 4 4
122 20.62 wind 5.0 43200 > th dose independent rect. 16 1
123 20.62 wind 1.0 43200 > th dose independent rect. 19 1
130 20.63 wind 1.0 43200 < th dose independent rect. 21 1
141 20.64 temperature 30.0 720 < th dose dependent rect. 23 7
143 20.65 radiation 10.0 43200 < th dose independent rect. 13 1
144 20.65 radiation 10.0 43200 > th dose independent rect. 7 2
161 20.65 wind 3.0 43200 > th dose dependent rect. 16 1
166 20.66 humidity 70.0 43200 < th dose independent rect. 10 1
179 20.67 wind 1.0 43200 < th dose independent rect. 4 1
180 20.67 humidity 90.0 43200 < th dose independent rect. 22 1
181 20.67 humidity 70.0 43200 > th dose independent rect. 8 3
202 20.69 wind 1.0 43200 < th dose dependent rect. 19 3
204 20.70 radiation 10.0 43200 < th dose independent rect. 10 1
215 20.70 temperature 20.0 270 > th dose dependent rect. 22 20
225 20.71 temperature 25.0 1440 > th dose dependent rect. 17 1
231 20.72 wind 1.0 43200 < th dose independent rect. 19 1
240 20.72 radiation 30.0 43200 < th dose dependent rect. 13 1
242 20.72 temperature 25.0 270 < th dose dependent rect. 1 9
290 20.76 atmosphere 1005.0 43200 > th dose independent rect. 12 1
305 20.77 wind 9.0 43200 < th dose independent rect. 18 1
311 20.77 radiation 10.0 43200 < th dose independent rect. 10 5
318 20.77 radiation 1.0 1440 < th dose dependent rect. 17 12
321 20.78 humidity 80.0 43200 > th dose independent rect. 12 2
340 20.78 radiation 20.0 43200 < th dose dependent rect. 8 1
354 20.79 radiation 1.0 4320 < th dose dependent rect. 17 7
355 20.79 radiation 1.0 4320 < th dose dependent rect. 17 9
381 20.80 temperature 30.0 270 < th dose dependent sin 5 NA
382 20.80 wind 1.0 43200 < th dose dependent rect. 19 1
383 20.80 humidity 80.0 43200 < th dose dependent rect. 11 1
388 20.80 radiation 1.0 4320 < th dose dependent rect. 17 2
411 20.81 radiation 20.0 43200 < th dose dependent rect. 8 6
422 20.82 radiation 10.0 43200 > th dose independent sin 10 NA
424 20.82 precipitation 0.1 43200 > th dose independent rect. 14 1
425 20.82 precipitation 0.1 43200 < th dose independent rect. 14 1
434 20.82 radiation 1.0 43200 < th dose independent rect. 18 6
442 20.82 temperature 25.0 1440 > th dose independent rect. 10 12
446 20.82 temperature 30.0 720 < th dose dependent sin 10 NA
447 20.82 precipitation 0.1 43200 > th dose dependent rect. 14 1
448 20.82 precipitation 0.1 43200 < th dose dependent rect. 14 1
467 20.83 atmosphere 1005.0 43200 < th dose independent rect. 12 1
469 20.83 radiation 1.0 43200 < th dose independent rect. 18 1
470 20.83 wind 9.0 43200 > th dose independent rect. 18 2
471 20.83 humidity 80.0 43200 < th dose independent rect. 12 2
491 20.83 radiation 1.0 43200 > th dose dependent rect. 13 1
505 20.83 temperature 10.0 720 > th dose dependent rect. 23 10
509 20.84 temperature 25.0 1440 > th dose independent sin 17 NA
515 20.84 wind 1.0 43200 < th dose independent rect. 19 3
535 20.84 humidity 80.0 43200 < th dose dependent rect. 8 4
546 20.85 radiation 1.0 4320 > th dose independent rect. 17 2
566 20.85 atmosphere 1005.0 43200 > th dose independent rect. 12 15
582 20.86 precipitation 0.1 43200 > th dose independent rect. 9 1
589 20.86 radiation 20.0 43200 > th dose independent rect. 7 6
605 20.86 atmosphere 1005.0 43200 > th dose independent rect. 12 12
634 20.86 radiation 1.0 43200 < th dose dependent rect. 4 1
635 20.86 precipitation 0.1 43200 > th dose dependent rect. 9 1
636 20.86 wind 9.0 43200 > th dose dependent rect. 18 2
637 20.86 humidity 90.0 43200 > th dose dependent rect. 21 2
663 20.87 precipitation 0.1 43200 < th dose independent rect. 9 1
680 20.87 atmosphere 1005.0 43200 > th dose independent rect. 16 11
697 20.87 precipitation 0.1 43200 < th dose dependent rect. 9 1
702 20.87 humidity 90.0 43200 > th dose dependent rect. 19 4
717 20.88 atmosphere 1005.0 43200 > th dose independent sin 16 NA
720 20.88 wind 1.0 43200 > th dose independent rect. 7 1
722 20.88 radiation 30.0 43200 > th dose independent rect. 9 1
752 20.88 atmosphere 1005.0 43200 < th dose independent rect. 12 15
788 20.89 temperature 25.0 1440 < th dose independent sin 17 NA
791 20.89 radiation 20.0 43200 > th dose independent sin 7 NA
792 20.89 radiation 20.0 43200 > th dose independent sin 5 NA
795 20.89 wind 1.0 43200 > th dose independent rect. 21 1
797 20.89 radiation 30.0 43200 > th dose independent rect. 13 1
812 20.89 atmosphere 1005.0 43200 > th dose independent rect. 16 7
839 20.89 atmosphere 1005.0 43200 < th dose independent rect. 16 11
842 20.89 radiation 40.0 43200 < th dose independent rect. 16 11
848 20.89 atmosphere 1005.0 43200 < th dose independent rect. 12 13
877 20.89 temperature 20.0 1440 > th dose dependent rect. 4 1
886 20.89 radiation 1.0 43200 < th dose dependent rect. 21 8
915 20.90 radiation 40.0 43200 < th dose independent rect. 16 8
922 20.90 atmosphere 1005.0 43200 < th dose independent rect. 16 9
928 20.90 atmosphere 1005.0 43200 < th dose independent rect. 12 11
976 20.91 atmosphere 1005.0 43200 < th dose independent sin 16 NA
982 20.91 atmosphere 1005.0 43200 < th dose independent rect. 21 1
993 20.91 atmosphere 1005.0 43200 > th dose independent rect. 18 5