BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0303200 Os01g0303200|AK073769
(967 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0303200 Conserved hypothetical protein 1875 0.0
Os05g0355133 Conserved hypothetical protein 83 8e-16
>Os01g0303200 Conserved hypothetical protein
Length = 967
Score = 1875 bits (4858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/967 (94%), Positives = 914/967 (94%)
Query: 1 MAATVEEQMVVKAIREECPWESLPKRLQSTLHTKEEWHRRIVDYCIRKRLQWNTCFARRV 60
MAATVEEQMVVKAIREECPWESLPKRLQSTLHTKEEWHRRIVDYCIRKRLQWNTCFARRV
Sbjct: 1 MAATVEEQMVVKAIREECPWESLPKRLQSTLHTKEEWHRRIVDYCIRKRLQWNTCFARRV 60
Query: 61 CREGEYYEEMMKYLRRNLALYPYHLADYICRVSRISPFRYYCDILFEAMKNEQPYDSIPN 120
CREGEYYEEMMKYLRRNLALYPYHLADYICRVSRISPFRYYCDILFEAMKNEQPYDSIPN
Sbjct: 61 CREGEYYEEMMKYLRRNLALYPYHLADYICRVSRISPFRYYCDILFEAMKNEQPYDSIPN 120
Query: 121 FTAADALRLTGVGRNEFIDIMNKCRSKKLMWKLNKSIAKELLPTQPVDFPIDPWWGVCLV 180
FTAADALRLTGVGRNEFIDIMNKCRSKKLMWKLNKSIAKELLPTQPVDFPIDPWWGVCLV
Sbjct: 121 FTAADALRLTGVGRNEFIDIMNKCRSKKLMWKLNKSIAKELLPTQPVDFPIDPWWGVCLV 180
Query: 181 NFTIEEFKKLSEEETATIDKICKEEANSYVLFDPKVIDGLYKRGLVYFDVPVYPDDRFKV 240
NFTIEEFKKLSEEETATIDKICKEEANSYVLFDPKVIDGLYKRGLVYFDVPVYPDDRFKV
Sbjct: 181 NFTIEEFKKLSEEETATIDKICKEEANSYVLFDPKVIDGLYKRGLVYFDVPVYPDDRFKV 240
Query: 241 SRLEGFVSNKDQSYEDPIEELLYAVFVVSSXXXXXXXXXXXXXXXXXXXXXXXSFACRLG 300
SRLEGFVSNKDQSYEDPIEELLYAVFVVSS SFACRLG
Sbjct: 241 SRLEGFVSNKDQSYEDPIEELLYAVFVVSSANATVAELAATLLADLYQLQAAASFACRLG 300
Query: 301 WAVKLMDADSVLEDAPTFPSNILSDDEEGSNASINSEKSGQQLLSVDAGPRKISGTAHVA 360
WAVKLMDADSVLEDAPTFPSNILSDDEEGSNASINSEKSGQQLLSVDAGPRKISGTAHVA
Sbjct: 301 WAVKLMDADSVLEDAPTFPSNILSDDEEGSNASINSEKSGQQLLSVDAGPRKISGTAHVA 360
Query: 361 LVVDANVTSYLMMGSLSPGLKSHAVTLYEAGKLGDSCIAELCSDLASLEGKKFEGVLEEF 420
LVVDANVTSYLMMGSLSPGLKSHAVTLYEAGKLGDSCIAELCSDLASLEGKKFEGVLEEF
Sbjct: 361 LVVDANVTSYLMMGSLSPGLKSHAVTLYEAGKLGDSCIAELCSDLASLEGKKFEGVLEEF 420
Query: 421 ANHAFSLRCFLECLQSGGVSTNVNIDKAGEAKLTTSSLQDNVTAHLTKINIEDTDEMPQQ 480
ANHAFSLRCFLECLQSGGVSTNVNIDKAGEAKLTTSSLQDNVTAHLTKINIEDTDEMPQQ
Sbjct: 421 ANHAFSLRCFLECLQSGGVSTNVNIDKAGEAKLTTSSLQDNVTAHLTKINIEDTDEMPQQ 480
Query: 481 KHSGLNSSDGKMLTSSATLLESGEGMEGNDVEGSGTTELDGSTDINVVKTKRKYRVDILR 540
KHSGLNSSDGKMLTSSATLLESGEGMEGNDVEGSGTTELDGSTDINVVKTKRKYRVDILR
Sbjct: 481 KHSGLNSSDGKMLTSSATLLESGEGMEGNDVEGSGTTELDGSTDINVVKTKRKYRVDILR 540
Query: 541 CESLASLPPATLERLFLRDYDIIVSMXXXXXXXXXXXXXXXIHFGPPSYSSMTPWMKLVL 600
CESLASLPPATLERLFLRDYDIIVSM IHFGPPSYSSMTPWMKLVL
Sbjct: 541 CESLASLPPATLERLFLRDYDIIVSMVPLPSSSVLPGSSGPIHFGPPSYSSMTPWMKLVL 600
Query: 601 YTAGDCGPLSAVFMKGQRIRLLPKPLAGCEKALIWSWDSSVVGGLGGKFEGNLVKGNLLL 660
YTAGDCGPLSAVFMKGQRIRLLPKPLAGCEKALIWSWDSSVVGGLGGKFEGNLVKGNLLL
Sbjct: 601 YTAGDCGPLSAVFMKGQRIRLLPKPLAGCEKALIWSWDSSVVGGLGGKFEGNLVKGNLLL 660
Query: 661 HCLNSMLKQSAVMVQPLSVNDLNASGNLVTVDIPLPLKSDDQSIASVIAQTNLPQEQVLN 720
HCLNSMLKQSAVMVQPLSVNDLNASGNLVTVDIPLPLKSDDQSIASVIAQTNLPQEQVLN
Sbjct: 661 HCLNSMLKQSAVMVQPLSVNDLNASGNLVTVDIPLPLKSDDQSIASVIAQTNLPQEQVLN 720
Query: 721 LASVLKDLSSKFEXXXXXXXXXXXXXXXTESDESHLENGSYQWVPLSLEFGIPLFSPKLC 780
LASVLKDLSSKFE TESDESHLENGSYQWVPLSLEFGIPLFSPKLC
Sbjct: 721 LASVLKDLSSKFELSTLGYLRLLRLHRLTESDESHLENGSYQWVPLSLEFGIPLFSPKLC 780
Query: 781 ERICERVVESCILQKEDLAEHYDVMQTVRRRLRELCSEYQATGPVAKLFNKRGSSKDLPR 840
ERICERVVESCILQKEDLAEHYDVMQTVRRRLRELCSEYQATGPVAKLFNKRGSSKDLPR
Sbjct: 781 ERICERVVESCILQKEDLAEHYDVMQTVRRRLRELCSEYQATGPVAKLFNKRGSSKDLPR 840
Query: 841 VLINTISGRWNPVNDPSAPSEHERLKLAGRQRCQTEVVGFDGTFIRSYALPPEHDEAGTK 900
VLINTISGRWNPVNDPSAPSEHERLKLAGRQRCQTEVVGFDGTFIRSYALPPEHDEAGTK
Sbjct: 841 VLINTISGRWNPVNDPSAPSEHERLKLAGRQRCQTEVVGFDGTFIRSYALPPEHDEAGTK 900
Query: 901 SLSEEQSSAHDGKPDTEDADSKDVLLPGVNLIFDGAELHPFDISACLQARQPLWLIAEAS 960
SLSEEQSSAHDGKPDTEDADSKDVLLPGVNLIFDGAELHPFDISACLQARQPLWLIAEAS
Sbjct: 901 SLSEEQSSAHDGKPDTEDADSKDVLLPGVNLIFDGAELHPFDISACLQARQPLWLIAEAS 960
Query: 961 AASSTMI 967
AASSTMI
Sbjct: 961 AASSTMI 967
>Os05g0355133 Conserved hypothetical protein
Length = 68
Score = 83.2 bits (204), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/41 (78%), Positives = 39/41 (95%)
Query: 40 RIVDYCIRKRLQWNTCFARRVCREGEYYEEMMKYLRRNLAL 80
RIVDYCIRKRL W +CFAR++C+EGEYYEE+M+YLRRNLA+
Sbjct: 13 RIVDYCIRKRLPWTSCFARKICKEGEYYEELMRYLRRNLAV 53
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,594,693
Number of extensions: 1324130
Number of successful extensions: 3505
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3504
Number of HSP's successfully gapped: 2
Length of query: 967
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 857
Effective length of database: 11,292,261
Effective search space: 9677467677
Effective search space used: 9677467677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)