BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0302900 Os01g0302900|AK107212
         (102 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0302900  Conserved hypothetical protein                      163   3e-41
Os01g0240750                                                       76   6e-15

>Os01g0302900 Conserved hypothetical protein
          Length = 102

 Score =  163 bits (412), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/102 (81%), Positives = 83/102 (81%)

Query: 1   MRGELVSRFLTGAEQSTVEHLYVHLRSSSVRDRVTFYFHYLNLLLRASCFTGSTSLPDFX 60
           MRGELVSRFLTGAEQSTVEHLYVHLRSSSVRDRVTFYFHYLNLLLRASCFTGSTSLPDF 
Sbjct: 1   MRGELVSRFLTGAEQSTVEHLYVHLRSSSVRDRVTFYFHYLNLLLRASCFTGSTSLPDFS 60

Query: 61  XXXXXXXXXXXXXXXXXXASRSMCSMAWPPCAGLLSARVCPL 102
                             ASRSMCSMAWPPCAGLLSARVCPL
Sbjct: 61  GGSPRPSPTSRCSTSTLSASRSMCSMAWPPCAGLLSARVCPL 102



>Os01g0240750 
          Length = 223

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 40/46 (86%)

Query: 2   RGELVSRFLTGAEQSTVEHLYVHLRSSSVRDRVTFYFHYLNLLLRA 47
           RGE V RFL GAEQSTV+HLY+HLRSSS RDR+TF FHYLN LL++
Sbjct: 76  RGEFVWRFLVGAEQSTVKHLYIHLRSSSARDRITFSFHYLNPLLQS 121



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,547,009
Number of extensions: 60070
Number of successful extensions: 158
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 102
Length of database: 17,035,801
Length adjustment: 70
Effective length of query: 32
Effective length of database: 13,380,821
Effective search space: 428186272
Effective search space used: 428186272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)