Os01g0302900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0302900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.1 | 0.536 | 6.24 | -0.796 | 1.31 | -1.84 | -0.813 | 0.613 | -0.0774 | 1.55 | 22.74 | 620 | -- | -- |
| 130.5 | 0.532 | 6.23 | -0.72 | 1.33 | -1.95 | -0.879 | -- | -0.0557 | 1.55 | 22.6 | 602 | -- | -- |
| 132.6 | 0.536 | 6.24 | -0.81 | 1.3 | -1.81 | -- | 0.895 | -0.0802 | 1.57 | 22.71 | 651 | -- | -- |
| 133.51 | 0.538 | 6.23 | -0.709 | 1.3 | -2 | -- | -- | -0.0604 | 1.6 | 22.55 | 636 | -- | -- |
| 217.68 | 0.687 | 6.29 | -1.05 | -- | -2.2 | -- | 1.35 | -0.299 | -- | 27.62 | 958 | -- | -- |
| 175.56 | 0.621 | 6.17 | -0.245 | 1.4 | -- | -0.987 | -- | 0.223 | 1.11 | -- | -- | -- | -- |
| 179.6 | 0.628 | 6.17 | -0.21 | 1.41 | -- | -- | -- | 0.228 | 1.14 | -- | -- | -- | -- |
| 218.25 | 0.688 | 6.26 | -0.834 | -- | -2.29 | -- | -- | -0.255 | -- | 27.37 | 957 | -- | -- |
| 144.97 | 0.561 | 6.21 | -- | 1.32 | -1.62 | -- | -- | 0.0338 | 1.51 | 22.9 | 606 | -- | -- |
| 302.22 | 0.812 | 6.14 | -0.156 | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
| 180.76 | 0.629 | 6.16 | -- | 1.4 | -- | -- | -- | 0.251 | 1.14 | -- | -- | -- | -- |
| 234.25 | 0.713 | 6.22 | -- | -- | -1.94 | -- | -- | -0.0964 | -- | 27.37 | 945 | -- | -- |
| 302.87 | 0.812 | 6.14 | -- | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 17 | 132.45 | temperature | 25 | 1440 | < th | dose dependent | sin | 1 | NA |
| 44 | 133.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 45 | 133.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 57 | 133.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 65 | 133.45 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 78 | 133.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 94 | 133.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 335 | 135.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 394 | 135.26 | temperature | 20 | 720 | < th | dose dependent | sin | 12 | NA |
| 407 | 135.31 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 438 | 135.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 516 | 135.67 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 550 | 135.77 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 564 | 135.81 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 569 | 135.82 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 10 |
| 574 | 135.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 607 | 135.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 624 | 135.96 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 754 | 136.24 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 763 | 136.26 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 872 | 136.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 884 | 136.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 20 | 16 |
| 921 | 136.56 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 948 | 136.62 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 955 | 136.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |