BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0288800 Os01g0288800|AK108858
         (96 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0288800  Conserved hypothetical protein                      149   3e-37
Os01g0289200                                                       84   2e-17

>Os01g0288800 Conserved hypothetical protein
          Length = 96

 Score =  149 bits (377), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 75/96 (78%)

Query: 1  MGGRGKKKSVLASLFGFKSXXXXXXXXXXXXXXXXXXXXXKQQQRSYYCPERRRRVWPSD 60
          MGGRGKKKSVLASLFGFKS                     KQQQRSYYCPERRRRVWPSD
Sbjct: 1  MGGRGKKKSVLASLFGFKSGGERRRQQQQEEMATAAAAGRKQQQRSYYCPERRRRVWPSD 60

Query: 61 EDNDNYYAERDIDRRASEFIDKVHRGMLIAGGEQDG 96
          EDNDNYYAERDIDRRASEFIDKVHRGMLIAGGEQDG
Sbjct: 61 EDNDNYYAERDIDRRASEFIDKVHRGMLIAGGEQDG 96



>Os01g0289200 
          Length = 98

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 56/97 (57%), Gaps = 6/97 (6%)

Query: 3  GRGKKKSVLASLFGFKSXXXXXXXXXXXXXXXXXXXXXKQQQRSYYCPERRRRVWPSDED 62
          GRGKK+SV A LFGFKS                       QQ  +     + +VWPSD D
Sbjct: 2  GRGKKRSVFAFLFGFKSNGDGDGGRRDEAAAREQQGYYGHQQHPWGRTTTKTKVWPSDYD 61

Query: 63 NDNYY-----AERDIDRRASEFIDKVHRGMLI-AGGE 93
          +DNYY     AERDIDRRASEFID+VHRGML  AGGE
Sbjct: 62 DDNYYGRQWYAERDIDRRASEFIDRVHRGMLAGAGGE 98



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,932,079
Number of extensions: 87372
Number of successful extensions: 210
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 2
Length of query: 96
Length of database: 17,035,801
Length adjustment: 65
Effective length of query: 31
Effective length of database: 13,641,891
Effective search space: 422898621
Effective search space used: 422898621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)