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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0288800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0373) R2 : 0.000846
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0488 (0.0786) R2dN8 : 0.00109 R2N8 : 0.000846
σ : 0.703
deviance : 226.82
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.96 0.654 2.88 0.421 0.121 12.8 -0.184 25.8 0.103 6.31 1.08 80 9.1 3.1
206.35 0.674 2.85 0.287 0.137 4.22 -0.32 -- 0.0889 7.01 1.08 80 9.1 3.1
197.04 0.654 2.88 0.419 0.12 12.9 -- 25.8 0.103 6.17 1.079 79 9.11 3.12
197.04 0.654 2.85 0.322 0.12 4.3 -- -- 0.103 6.17 1.005 77 9.11 3.06
197.79 0.655 2.88 0.423 -- 12.9 -- 25.9 0.106 -- 1.082 78 9.1 3.1
223.85 0.701 2.85 0.237 0.142 -- -0.413 -- 0.0718 8.04 -- -- -- --
224.34 0.701 2.85 0.224 0.145 -- -- -- 0.0717 7.54 -- -- -- --
197.79 0.655 2.85 0.326 -- 4.31 -- -- 0.106 -- 0.9838 77 9.12 3.08
199.76 0.658 2.85 -- 0.125 4.17 -- -- 0.0664 6.09 1.154 79 9.11 3.2
225.47 0.702 2.85 0.226 -- -- -- -- 0.074 -- -- -- -- --
225.67 0.703 2.86 -- 0.147 -- -- -- 0.0467 7.44 -- -- -- --
200.58 0.66 2.86 -- -- 4.18 -- -- 0.0689 -- 1.182 78 9.12 3.21
226.82 0.703 2.86 -- -- -- -- -- 0.0488 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.19 radiation 1 90 < th dose independent rect. 9 3
2 197.19 radiation 1 90 < th dose dependent rect. 9 3
11 204.28 wind 5 90 > th dose independent rect. 13 1
12 204.86 wind 5 90 > th dose dependent rect. 12 2
15 206.27 radiation 1 10 < th dose independent rect. 7 5
17 206.27 radiation 1 10 < th dose dependent rect. 7 5
24 207.21 radiation 1 10 < th dose independent rect. 11 1
41 207.21 radiation 1 10 < th dose dependent rect. 11 1
58 207.37 wind 5 10 > th dose independent rect. 13 1
71 210.35 wind 5 10 > th dose dependent rect. 13 1
81 212.01 temperature 25 90 < th dose dependent rect. 12 1
97 213.54 temperature 25 10 < th dose independent rect. 13 1
115 214.40 atmosphere 995 4320 > th dose independent rect. 9 5
123 214.67 radiation 20 10 < th dose independent rect. 12 1
133 215.13 atmosphere 995 4320 > th dose independent rect. 4 10
134 215.20 wind 1 10 < th dose independent rect. 8 1
136 215.20 wind 1 10 < th dose dependent rect. 8 1
138 215.31 atmosphere 995 4320 > th dose independent rect. 10 7
140 215.39 atmosphere 995 4320 > th dose independent rect. 10 9
142 215.51 atmosphere 995 4320 > th dose independent rect. 6 8
143 215.53 atmosphere 995 4320 > th dose independent rect. 10 11
144 215.54 atmosphere 995 4320 > th dose independent rect. 12 5
145 215.55 atmosphere 995 4320 > th dose independent rect. 12 7
148 215.61 atmosphere 995 4320 < th dose independent rect. 15 1
149 215.62 atmosphere 995 4320 > th dose independent rect. 15 1
151 215.62 atmosphere 995 4320 < th dose dependent rect. 15 2
190 215.66 atmosphere 995 4320 > th dose independent rect. 12 9
243 215.78 wind 1 90 < th dose dependent rect. 2 1
259 215.82 atmosphere 995 4320 > th dose independent rect. 1 13
292 216.00 atmosphere 995 4320 > th dose independent rect. 7 10
348 216.49 atmosphere 995 4320 > th dose independent rect. 14 5
352 216.62 atmosphere 995 4320 > th dose independent rect. 14 7
355 216.66 atmosphere 995 4320 > th dose independent rect. 7 12
361 216.75 humidity 90 720 < th dose independent rect. 2 1
367 216.85 atmosphere 995 4320 > th dose independent rect. 7 14
368 216.85 radiation 1 4320 < th dose dependent rect. 23 1
378 216.98 atmosphere 995 4320 > th dose independent rect. 22 16
380 217.00 humidity 60 30 < th dose independent rect. 17 1
395 217.20 radiation 1 720 > th dose independent rect. 4 1
406 217.20 radiation 1 720 > th dose dependent rect. 4 1
421 217.36 humidity 60 90 < th dose dependent rect. 17 1
520 217.50 atmosphere 1005 4320 > th dose independent rect. 14 3
522 217.51 atmosphere 1005 4320 < th dose independent rect. 14 1
536 217.51 atmosphere 995 4320 > th dose independent rect. 19 19
556 217.55 atmosphere 1005 4320 > th dose independent rect. 14 6
561 217.59 temperature 30 10 < th dose dependent rect. 13 1
567 217.61 atmosphere 1005 4320 < th dose independent rect. 14 5
701 217.73 atmosphere 1005 4320 < th dose independent rect. 16 1
722 217.82 wind 1 90 < th dose independent rect. 6 1
726 217.83 wind 1 30 < th dose independent rect. 2 2
737 217.88 atmosphere 1005 30 > th dose dependent rect. 6 2
741 217.91 radiation 1 4320 < th dose dependent rect. 22 5
775 218.04 atmosphere 1005 4320 < th dose independent rect. 18 1
793 218.10 atmosphere 1005 4320 > th dose independent rect. 13 14
819 218.15 radiation 1 4320 < th dose dependent rect. 19 8
820 218.16 atmosphere 1005 4320 > th dose independent sin 18 NA
864 218.28 atmosphere 1005 4320 < th dose independent rect. 13 15
866 218.28 atmosphere 1000 4320 > th dose dependent rect. 23 1
874 218.30 wind 1 270 < th dose independent rect. 2 1
929 218.38 atmosphere 1005 4320 < th dose independent sin 18 NA
937 218.39 humidity 90 720 < th dose independent rect. 1 6
971 218.45 humidity 90 720 < th dose independent rect. 24 21
976 218.46 atmosphere 1015 4320 < th dose dependent rect. 18 1
977 218.46 atmosphere 1015 4320 < th dose dependent rect. 23 1