BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0284900 Os01g0284900|AK106618
         (297 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0284900  Conserved hypothetical protein                      301   3e-82
Os05g0140333  Conserved hypothetical protein                       87   2e-17

>Os01g0284900 Conserved hypothetical protein
          Length = 297

 Score =  301 bits (772), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 173/297 (58%), Positives = 173/297 (58%)

Query: 1   MASPSAAATARKLGSHLPRLRDIIXXXXXXXXXXXXXXXXXXXXXXMSKRMSRLSVEXXX 60
           MASPSAAATARKLGSHLPRLRDII                      MSKRMSRLSVE   
Sbjct: 1   MASPSAAATARKLGSHLPRLRDIIDHDDEDDDFVEEEEEEEEEWEDMSKRMSRLSVEGSD 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVRSDVNXXXXXXXXXXXQWHPYGDDDPRNPQAPSS 120
                                    VRSDVN           QWHPYGDDDPRNPQAPSS
Sbjct: 61  GGDADDEDDGYLRGEEEEEEEDGDEVRSDVNGEYGDGGGGGGQWHPYGDDDPRNPQAPSS 120

Query: 121 ASLPGTPDRGAPAPSPWMYSKEYASETEAARWPGGDKXXXXXXXXXXXXXVWLDRAWXXX 180
           ASLPGTPDRGAPAPSPWMYSKEYASETEAARWPGGDK             VWLDRAW   
Sbjct: 121 ASLPGTPDRGAPAPSPWMYSKEYASETEAARWPGGDKRRMRHRRERMMREVWLDRAWQMR 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAMDMEEMRACRDLGLDLPCDWTVE 240
                                              VAMDMEEMRACRDLGLDLPCDWTVE
Sbjct: 181 KQRRQMLMQGQGLGADAVTVVVSAAAAGGESPARGVAMDMEEMRACRDLGLDLPCDWTVE 240

Query: 241 IPCYALSGVDTXXXXXXXXXXXXWRISSPGDDPKDVKARLKVWAQAVALASASRLGS 297
           IPCYALSGVDT            WRISSPGDDPKDVKARLKVWAQAVALASASRLGS
Sbjct: 241 IPCYALSGVDTASSGGNSPASGSWRISSPGDDPKDVKARLKVWAQAVALASASRLGS 297



>Os05g0140333 Conserved hypothetical protein
          Length = 292

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 55/90 (61%), Gaps = 10/90 (11%)

Query: 218 MDMEEMRACRDLGLDLPCDWTVEIPCYALSGVDTXXXXX---------XXXXXXXWRISS 268
           MDMEE+RACRDLGL+LP D TVEI CY LS   +                       + S
Sbjct: 203 MDMEEVRACRDLGLELPSDCTVEIQCYGLSATSSPTHTNSGSCSSGAASPSAAAACSLPS 262

Query: 269 PG-DDPKDVKARLKVWAQAVALASASRLGS 297
           PG DDP DVKARLKVWAQAVALAS + LGS
Sbjct: 263 PGADDPMDVKARLKVWAQAVALASTTHLGS 292



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,849,347
Number of extensions: 224284
Number of successful extensions: 1256
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1252
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 197
Effective length of database: 11,814,401
Effective search space: 2327436997
Effective search space used: 2327436997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)