BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0283500 Os01g0283500|AK064158
         (350 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0283500  Rhomboid-like protein family protein                525   e-149

>Os01g0283500 Rhomboid-like protein family protein
          Length = 350

 Score =  525 bits (1351), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/299 (87%), Positives = 261/299 (87%)

Query: 39  EYGRAGASRPPVTXXXXXXXXXXXXRPGSLDALLPSLNRVAFNPHLIIHYCDLTRFFLSA 98
           EYGRAGASRPPVT            RPGSLDALLPSLNRVAFNPHLIIHYCDLTRFFLSA
Sbjct: 39  EYGRAGASRPPVTAALLAANALLYLRPGSLDALLPSLNRVAFNPHLIIHYCDLTRFFLSA 98

Query: 99  FYHLSETHFFFNMSSLLWKGIQLETSMGSVEFASMVAALLGMSQGITXXXXXXXXXFGND 158
           FYHLSETHFFFNMSSLLWKGIQLETSMGSVEFASMVAALLGMSQGIT         FGND
Sbjct: 99  FYHLSETHFFFNMSSLLWKGIQLETSMGSVEFASMVAALLGMSQGITLLLSKGLLLFGND 158

Query: 159 EAYYDQYAVGFSGVLFGMKVVLNAWSDDYVFLHGVVIPAKYAAWAELLLIQAFIPGTSXX 218
           EAYYDQYAVGFSGVLFGMKVVLNAWSDDYVFLHGVVIPAKYAAWAELLLIQAFIPGTS  
Sbjct: 159 EAYYDQYAVGFSGVLFGMKVVLNAWSDDYVFLHGVVIPAKYAAWAELLLIQAFIPGTSLI 218

Query: 219 XXXXXXXXXXXXXXXKRSFSGPDPLSLLISGIGKAVRWPVGFVQKLFRSGRPQGYTPSRG 278
                          KRSFSGPDPLSLLISGIGKAVRWPVGFVQKLFRSGRPQGYTPSRG
Sbjct: 219 GHLGGILAGLAYLWLKRSFSGPDPLSLLISGIGKAVRWPVGFVQKLFRSGRPQGYTPSRG 278

Query: 279 RVGRGSARENGRGIWRCSACTYDNSPSTDICEMCSSAREDHAFSHRQHLQAGGNGEPSV 337
           RVGRGSARENGRGIWRCSACTYDNSPSTDICEMCSSAREDHAFSHRQHLQAGGNGEPSV
Sbjct: 279 RVGRGSARENGRGIWRCSACTYDNSPSTDICEMCSSAREDHAFSHRQHLQAGGNGEPSV 337



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,416,596
Number of extensions: 396692
Number of successful extensions: 926
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 248
Effective length of database: 11,709,973
Effective search space: 2904073304
Effective search space used: 2904073304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)